Supplementary data and code for "A Bayesian framework for inferring regional and global change from stratigraphic proxy records (StratMC v1.0)"

This repository contains code and inference results for the synthetic experiments in the journal article "A Bayesian framework for inferring regional and global change from stratigraphic proxy records (StratMC v1.0)" (Edmonsond & Dyer, 2025). The associated Python package, StratMC, is archived at https://doi.org/10.5281/zenodo.13281935, along with a supplementary User Manual. The latest version of the StratMC package can be installed from the Github repository or via the PyPI installer (pip install stratmc). The current package documentation is available at https://stratmc.readthedocs.io/. The notebooks.zip archive contains Jupyter notebooks that can be used to re-run each synthetic experiment or to load and analyze the original inference results. To run these notebooks, extract the traces.zip archive (which contains NetCDF files with the posterior traces for each experiment) and the data.zip archive into the notebooks directory. StratMC also must be installed on your machine. To reduce file sizes, the posteriors in traces.zip have been thinned by removing every third draw (the original traces had 1,000 draws per chain; the provided traces have 666 draws per chain). Thinning has no effect on the results.

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Publication Details

Journal
Zenodo (CERN European Organization for Nuclear Research)
Published
2024-08-14
DOI
https://doi.org/10.5281/zenodo.13119723
Primary Topic
Oceanographic and Atmospheric Processes
Type
article
Field-Weighted Citation Impact
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article

Supplementary data and code for "A Bayesian framework for inferring regional and global change from stratigraphic proxy records (StratMC v1.0)"

Zenodo (CERN European Organization for Nuclear Research)
Oceanographic and Atmospheric Processes
article

Supplementary data and code for "A Bayesian framework for inferring regional and global change from stratigraphic proxy records (StratMC v1.0)"

article en

Abstract

This repository contains code and inference results for the synthetic experiments in the journal article "A Bayesian framework for inferring regional and global change from stratigraphic proxy records (StratMC v1.0)" (Edmonsond & Dyer, 2025). The associated Python package, StratMC, is archived at https://doi.org/10.5281/zenodo.13281935, along with a supplementary User Manual. The latest version of the StratMC package can be installed from the Github repository or via the PyPI installer (pip install stratmc). The current package documentation is available at https://stratmc.readthedocs.io/. The notebooks.zip archive contains Jupyter notebooks that can be used to re-run each synthetic experiment or to load and analyze the original inference results. To run these notebooks, extract the traces.zip archive (which contains NetCDF files with the posterior traces for each experiment) and the data.zip archive into the notebooks directory. StratMC also must be installed on your machine. To reduce file sizes, the posteriors in traces.zip have been thinned by removing every third draw (the original traces had 1,000 draws per chain; the provided traces have 666 draws per chain). Thinning has no effect on the results.

Zenodo (CERN European Organization for Nuclear Research)
University of Victoria (CA)
Openalex Percentile: Top 69%
Oceanographic and Atmospheric Processes
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