QuantumCoulombic Interactions Mediate Free RadicalControl in Radical SAM Viperin/RSAD2

There are thousands of radical <i>S</i>-adenosylmethionine (rSAM) enzymes capable of catalyzing over 80 distinct reactions, yet their use in biotechnological applications is limited, primarily due to a lack of understanding of how these enzymes control highly reactive radical intermediates. Here, we show that little-known quantum Coulombic interactions are, in part, responsible for free radical control in rSAM enzyme Viperin/RSAD2, one of the few radical SAM enzymes expressed in humans. Using molecular dynamics and high-level extensive multistate broken-symmetry quantum mechanical/molecular mechanics calculations (QM/MM), we elucidated both the mechanism and radical control in catalysis, identifying a key step characterized by the formation of an unusual metastable deprotonated ribose radical intermediate. This intermediate is thermodynamically stabilized by spin-charge exchange–correlation interactionsa quantum Coulombic effect. The magnitude of this stabilization is such that the radical displays acidity two to six p<i>K</i><sub>a</sub> units lower than that of closed-shell ribose. Given the omnipresence of charges in biological systems, these interactions potentially represent a universal mechanism for stabilizing and controlling highly reactive radical intermediates across radical enzymes, opening new avenues for enzymatic engineering and biotechnological applications.

Publication Details

Journal
Figshare
Published
2025-03-26
DOI
https://doi.org/10.1021/jacs.5c00572.s001
Primary Topic
Metalloenzymes and iron-sulfur proteins
Type
article
Field-Weighted Citation Impact
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QuantumCoulombic Interactions Mediate Free RadicalControl in Radical SAM Viperin/RSAD2

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Metalloenzymes and iron-sulfur proteins
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QuantumCoulombic Interactions Mediate Free RadicalControl in Radical SAM Viperin/RSAD2

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Abstract

There are thousands of radical <i>S</i>-adenosylmethionine (rSAM) enzymes capable of catalyzing over 80 distinct reactions, yet their use in biotechnological applications is limited, primarily due to a lack of understanding of how these enzymes control highly reactive radical intermediates. Here, we show that little-known quantum Coulombic interactions are, in part, responsible for free radical control in rSAM enzyme Viperin/RSAD2, one of the few radical SAM enzymes expressed in humans. Using molecular dynamics and high-level extensive multistate broken-symmetry quantum mechanical/molecular mechanics calculations (QM/MM), we elucidated both the mechanism and radical control in catalysis, identifying a key step characterized by the formation of an unusual metastable deprotonated ribose radical intermediate. This intermediate is thermodynamically stabilized by spin-charge exchange–correlation interactionsa quantum Coulombic effect. The magnitude of this stabilization is such that the radical displays acidity two to six p<i>K</i><sub>a</sub> units lower than that of closed-shell ribose. Given the omnipresence of charges in biological systems, these interactions potentially represent a universal mechanism for stabilizing and controlling highly reactive radical intermediates across radical enzymes, opening new avenues for enzymatic engineering and biotechnological applications.

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Metalloenzymes and iron-sulfur proteins
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