Prioritization\nof the Secondary Metabolites for the\nRapid Annotation Based on Liquid Chromatography-High Resolution Mass\nSpectrometry Assessment: Varanasine and Schroffanone from Murraya paniculata and Cytotoxic Evaluation

The liquid chromatography-high resolution\nmass spectrometry (LC-HRMS)\ntechnique enables the detection of phytochemicals present in the extracts.\nLC-HRMS-generated mass list showed abundant compounds of interest,\nartifacts, and primary metabolites. The identification of a secondary\nmetabolite of interest within the extract is very challenging. We\nhypothesized that identifying the “new metabolite” in\nthe whole metabolome is more challenging than identifying it within\nthe class of metabolites. The proposed prioritization strategy focused\non the elimination of unknown and prioritizing the known class of\nsecondary metabolites to identify new metabolites. The prioritization\nstrategy demonstrated on Murraya paniculata for the identification of new metabolites. LC-HRMS-generated information\nis used as a filter to target the secondary metabolite and the new\nmetabolites. This strategy successfully annotated the new coumarin\nand coumarin alkaloids from the mass list of 1448 metabolites. Varanasine\n(<b>3</b>), schroffanone (<b>4</b>), schroffanene (<b>5</b>), and <i>O</i>-methylmurraol (<b>9</b>)\nare new compounds, and coumarin (<b>1</b>, <b>2</b>, and <b>6–8</b>) are known. Varanasine (<b>3</b>) is the\nfirst naturally occurring 7-aminocoumarin with additional <i>N</i>-formyl functionality. The isolates were screened for cytotoxicity\nagainst the panel of cancer cell lines. Varanasine (<b>3</b>) and minumicrollin (<b>6</b>) showed significant cytotoxicity\nand apoptosis-inducing potential. The immunoblot analysis confirmed\ninhibition of apoptotic protein PARP-1 and caspase-3 expression by <b>3</b> and <b>6</b>.

Publication Details

Journal
Figshare
Published
2024-09-30
DOI
https://doi.org/10.1021/acs.jproteome.4c00356.s001
Primary Topic
Plant chemical constituents analysis
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Prioritization\nof the Secondary Metabolites for the\nRapid Annotation Based on Liquid Chromatography-High Resolution Mass\nSpectrometry Assessment: Varanasine and Schroffanone from Murraya paniculata and Cytotoxic Evaluation

Figshare
Plant chemical constituents analysis
article

Prioritization\nof the Secondary Metabolites for the\nRapid Annotation Based on Liquid Chromatography-High Resolution Mass\nSpectrometry Assessment: Varanasine and Schroffanone from Murraya paniculata and Cytotoxic Evaluation

article en

Abstract

The liquid chromatography-high resolution\nmass spectrometry (LC-HRMS)\ntechnique enables the detection of phytochemicals present in the extracts.\nLC-HRMS-generated mass list showed abundant compounds of interest,\nartifacts, and primary metabolites. The identification of a secondary\nmetabolite of interest within the extract is very challenging. We\nhypothesized that identifying the “new metabolite” in\nthe whole metabolome is more challenging than identifying it within\nthe class of metabolites. The proposed prioritization strategy focused\non the elimination of unknown and prioritizing the known class of\nsecondary metabolites to identify new metabolites. The prioritization\nstrategy demonstrated on Murraya paniculata for the identification of new metabolites. LC-HRMS-generated information\nis used as a filter to target the secondary metabolite and the new\nmetabolites. This strategy successfully annotated the new coumarin\nand coumarin alkaloids from the mass list of 1448 metabolites. Varanasine\n(<b>3</b>), schroffanone (<b>4</b>), schroffanene (<b>5</b>), and <i>O</i>-methylmurraol (<b>9</b>)\nare new compounds, and coumarin (<b>1</b>, <b>2</b>, and <b>6–8</b>) are known. Varanasine (<b>3</b>) is the\nfirst naturally occurring 7-aminocoumarin with additional <i>N</i>-formyl functionality. The isolates were screened for cytotoxicity\nagainst the panel of cancer cell lines. Varanasine (<b>3</b>) and minumicrollin (<b>6</b>) showed significant cytotoxicity\nand apoptosis-inducing potential. The immunoblot analysis confirmed\ninhibition of apoptotic protein PARP-1 and caspase-3 expression by <b>3</b> and <b>6</b>.

Figshare
Openalex Percentile: Top 83%
Plant chemical constituents analysis
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.