Revealing the CrystalStructure of the Purine BaseXanthine with Three-Dimensional (3D) Electron Diffraction

Three-dimensional (3D) electron diffraction (3D-ED) techniques can be used for structure determination, circumventing challenges posed to conventional and bulk X-ray diffraction techniques such as submicrometer-sized crystals, the strong effects of texture, the presence of defects, and polyphasic samples. Such challenges previously prevented the structure solution of xanthine, a purine base chemically similar to guanine that may also be found in organisms. In this work, we use 3D-ED to elucidate the crystal structure of xanthine. The electron diffraction data obtained from a single microcrystal is also of sufficient quality to determine hydrogen positions, confirming the presence of the 7<i>H</i>-tautomer, as expected. This study highlights the potential for the use of 3D-ED on biogenic nanocrystals, for example opening opportunities to understand the links between crystal anisotropy, birefringence, and organism characteristics.

Publication Details

Journal
Figshare
Published
2025-02-12
DOI
https://doi.org/10.1021/acs.cgd.4c01594.s001
Primary Topic
Enzyme Structure and Function
Type
article
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article

Revealing the CrystalStructure of the Purine BaseXanthine with Three-Dimensional (3D) Electron Diffraction

Figshare
Enzyme Structure and Function
article

Revealing the CrystalStructure of the Purine BaseXanthine with Three-Dimensional (3D) Electron Diffraction

article en

Abstract

Three-dimensional (3D) electron diffraction (3D-ED) techniques can be used for structure determination, circumventing challenges posed to conventional and bulk X-ray diffraction techniques such as submicrometer-sized crystals, the strong effects of texture, the presence of defects, and polyphasic samples. Such challenges previously prevented the structure solution of xanthine, a purine base chemically similar to guanine that may also be found in organisms. In this work, we use 3D-ED to elucidate the crystal structure of xanthine. The electron diffraction data obtained from a single microcrystal is also of sufficient quality to determine hydrogen positions, confirming the presence of the 7<i>H</i>-tautomer, as expected. This study highlights the potential for the use of 3D-ED on biogenic nanocrystals, for example opening opportunities to understand the links between crystal anisotropy, birefringence, and organism characteristics.

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Enzyme Structure and Function
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