Correction: REV-ERB regulates RORγt+ regulatory T cell specification and function through the Bhlhe40-c-Maf axis

The authors regret that there were errors in the originally published version of their article.In Fig. 5, panels D and E have been switched to match the order of description in the main text.Panel D shows flow cytometric analysis of RORt expression in Foxp3 + iTreg cells with ectopic expression of Bhlhe40 or control vector, while panel E shows flow cytometric analysis of RORt expression in Foxp3 + iTreg cells transduced with sgNT and sgBhlhe40.In addition, "Il1r1 (encoding IL33R)" was corrected to "Il1rl1 (encoding IL33R)" in the "REV-ERB regulates the expression of core signature genes . .." section of the Results.The corrected text and the original and corrected figures and legends are shown here, with changes indicated in bold and underlined.These errors do not affect the conclusions of the study.The errors appear in PDFs downloaded before December 15, 2025. Results REV-ERB regulates the expression of core signature genes in colonic RORt + Foxp3 + Treg cells (first paragraph)To investigate how REV-ERB regulates the transcriptional programs in Treg cells, we performed RNA-seq analysis of colonic Treg cells isolated from WT and REV-ERB cKO mice after TNBS challenge.We identified 1030 upregulated genes and 952 downregulated genes (false discovery rate [FDR] <0.05) in REV-ERB-deficient Treg cells compared with WT controls (Fig. 3 A).REV-ERB-deficient colonic Treg cells expressed a lower level of Treg core genes including Foxp3, Ctla4, Icos, Gzmb, Il10, Lag3, Nt5e (encoding CD73), Entpd1 (encoding CD39), Il1rl1 (encoding IL33R), Lrrc32 (encoding GARP), and Itgae (encoding CD103).Furthermore, the expression of genes encoding RORt and c-Maf, a transcription factor critical for normal RORt + Foxp3 + Treg cell function and differentiation, was also reduced in REV-ERB-deficient Treg cells (Fig. 3 A).Previous studies showed that although they are generally stable and exert enhanced suppressive function, colonic RORt + Foxp3 + Treg cells could be proinflammatory in individuals with IBD (Quandt et al., 2021).In agreement with these observations, we found that the genes encoding proinflammatory cytokines, including Il17a, Il17f, Il4, and Il5, were significantly upregulated in REV-ERB-deficient colonic Treg cells (Fig. 3 A).To assess whether REV-ERB has a global impact on colonic Treg signature gene expression, we performed gene set enrichment analysis (GSEA) using a published gene set of 364 colonic Treg signature transcripts identified previously (Sefik et al., 2015).Indeed, these colonic Treg signature transcripts were significantly enriched in WT colonic Treg cells than REV-ERB-deficient colonic Treg cells (Fig. 3 B).Next, we extended to examine whether REV-ERB regulates RORt-dependent transcripts in colonic Treg cells.Again, GSEA revealed that RORt-dependent signature genes were preferably enriched in WT colonic Treg cells (Fig. 3 B), suggesting that REV-ERB is required for colonic RORt + Foxp3 + Treg signature gene expression.

Authors

Publication Details

Journal
The Journal of Experimental Medicine
Published
2025-12-18
DOI
https://doi.org/10.1084/jem.2024146312152025c
Primary Topic
T-cell and B-cell Immunology
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Correction: REV-ERB regulates RORγt+ regulatory T cell specification and function through the Bhlhe40-c-Maf axis

Chin-San Loo, Ye Zheng, Jingting Yu, Yannan You et al.
The Journal of Experimental Medicine
T-cell and B-cell Immunology
article

Correction: REV-ERB regulates RORγt+ regulatory T cell specification and function through the Bhlhe40-c-Maf axis

Chin-San Loo, Ye Zheng, Jingting Yu, Yannan You, Matthias Leblanc, Yuqiong Liang, Zhi Liu, Kaiye Yue, Huabin Li, Dehui Wang, Yao Li, Xianting Hu
article en

Abstract

The authors regret that there were errors in the originally published version of their article.In Fig. 5, panels D and E have been switched to match the order of description in the main text.Panel D shows flow cytometric analysis of RORt expression in Foxp3 + iTreg cells with ectopic expression of Bhlhe40 or control vector, while panel E shows flow cytometric analysis of RORt expression in Foxp3 + iTreg cells transduced with sgNT and sgBhlhe40.In addition, "Il1r1 (encoding IL33R)" was corrected to "Il1rl1 (encoding IL33R)" in the "REV-ERB regulates the expression of core signature genes . .." section of the Results.The corrected text and the original and corrected figures and legends are shown here, with changes indicated in bold and underlined.These errors do not affect the conclusions of the study.The errors appear in PDFs downloaded before December 15, 2025. Results REV-ERB regulates the expression of core signature genes in colonic RORt + Foxp3 + Treg cells (first paragraph)To investigate how REV-ERB regulates the transcriptional programs in Treg cells, we performed RNA-seq analysis of colonic Treg cells isolated from WT and REV-ERB cKO mice after TNBS challenge.We identified 1030 upregulated genes and 952 downregulated genes (false discovery rate [FDR] <0.05) in REV-ERB-deficient Treg cells compared with WT controls (Fig. 3 A).REV-ERB-deficient colonic Treg cells expressed a lower level of Treg core genes including Foxp3, Ctla4, Icos, Gzmb, Il10, Lag3, Nt5e (encoding CD73), Entpd1 (encoding CD39), Il1rl1 (encoding IL33R), Lrrc32 (encoding GARP), and Itgae (encoding CD103).Furthermore, the expression of genes encoding RORt and c-Maf, a transcription factor critical for normal RORt + Foxp3 + Treg cell function and differentiation, was also reduced in REV-ERB-deficient Treg cells (Fig. 3 A).Previous studies showed that although they are generally stable and exert enhanced suppressive function, colonic RORt + Foxp3 + Treg cells could be proinflammatory in individuals with IBD (Quandt et al., 2021).In agreement with these observations, we found that the genes encoding proinflammatory cytokines, including Il17a, Il17f, Il4, and Il5, were significantly upregulated in REV-ERB-deficient colonic Treg cells (Fig. 3 A).To assess whether REV-ERB has a global impact on colonic Treg signature gene expression, we performed gene set enrichment analysis (GSEA) using a published gene set of 364 colonic Treg signature transcripts identified previously (Sefik et al., 2015).Indeed, these colonic Treg signature transcripts were significantly enriched in WT colonic Treg cells than REV-ERB-deficient colonic Treg cells (Fig. 3 B).Next, we extended to examine whether REV-ERB regulates RORt-dependent transcripts in colonic Treg cells.Again, GSEA revealed that RORt-dependent signature genes were preferably enriched in WT colonic Treg cells (Fig. 3 B), suggesting that REV-ERB is required for colonic RORt + Foxp3 + Treg signature gene expression.

The Journal of Experimental MedicineVol. 223(2)
Openalex Percentile: Top 53%
T-cell and B-cell Immunology
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.