Segmentation and Multimodal Characterization of Metal Particles in the Human Hippocampus Using Discrete Segmentation Algorithms and Correlation Spectral Analysis

The accumulation of metallic micro- and nanoparticles in the human hippocampus is increasingly linked to neurotoxic processes and neurodegenerative disorders. Precise segmentation and detailed characterization of these particles are crucial to understanding their role. This study presents a novel method that combines discrete segmentation based on graph-cut theory with Dinic's algorithm for the computation of maximum flow. The images are modeled as directed weighted graphs, with pixel intensities and gradients defining edge capacities, enabling robust segmentation in electron microscopy data. To ensure robustness, the method is validated against ground-truth masks, achieving a Dice coefficient of 0.97898 ± 0.0172 and an Intersection over Union (IoU) of 0.9609 ± 0.0326. Morphometric parameters-area, perimeter, circularity, and Feret diameters-are automatically extracted. Concurrently, elemental analysis using Energy-Dispersive X-ray Spectroscopy (EDS) reveals a heterogeneous composition, including iron-rich particles and compounds containing nickel and chromium. The observed variability highlights the importance of single-particle analysis in better understanding the neurobiological impact of metallic deposits.

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Publication Details

Journal
Molecules
Published
2025-12-19
DOI
https://doi.org/10.3390/molecules31010009
Primary Topic
Advanced Electron Microscopy Techniques and Applications
Type
article
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article

Segmentation and Multimodal Characterization of Metal Particles in the Human Hippocampus Using Discrete Segmentation Algorithms and Correlation Spectral Analysis

Silvia Dulanská, Ján Pánik, Michal Trnka, Daniel Kosnáč et al.
Molecules
Advanced Electron Microscopy Techniques and Applications
article

Segmentation and Multimodal Characterization of Metal Particles in the Human Hippocampus Using Discrete Segmentation Algorithms and Correlation Spectral Analysis

Silvia Dulanská, Ján Pánik, Michal Trnka, Daniel Kosnáč, Martin Kopáni, Mária Ždímalová, Nazarii Kretsul
article en

Abstract

The accumulation of metallic micro- and nanoparticles in the human hippocampus is increasingly linked to neurotoxic processes and neurodegenerative disorders. Precise segmentation and detailed characterization of these particles are crucial to understanding their role. This study presents a novel method that combines discrete segmentation based on graph-cut theory with Dinic's algorithm for the computation of maximum flow. The images are modeled as directed weighted graphs, with pixel intensities and gradients defining edge capacities, enabling robust segmentation in electron microscopy data. To ensure robustness, the method is validated against ground-truth masks, achieving a Dice coefficient of 0.97898 ± 0.0172 and an Intersection over Union (IoU) of 0.9609 ± 0.0326. Morphometric parameters-area, perimeter, circularity, and Feret diameters-are automatically extracted. Concurrently, elemental analysis using Energy-Dispersive X-ray Spectroscopy (EDS) reveals a heterogeneous composition, including iron-rich particles and compounds containing nickel and chromium. The observed variability highlights the importance of single-particle analysis in better understanding the neurobiological impact of metallic deposits.

MoleculesVol. 31(1)
Slovak University of Technology in Bratislava (SK), Slovak Medical University (SK), Comenius University Bratislava (SK)
Openalex Percentile: Top 79%
Advanced Electron Microscopy Techniques and Applications
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Segmentation and Multimodal Characterization of Metal Particles in the Human Hippocampus Using Discrete Segmentation Algorithms and Correlation Spectral Analysis — Silvia Dulanská, Ján Pánik, et al. · Molecules (2025) | TGRS Research Map | TGRS