Nocardioides proteolyticus sp. nov. and Nocardioides ureilyticus sp. nov., isolated from desert rhizosphere soils

Strains SYSU DS0651<sup>T</sup> and SYSU DS0663<sup>T</sup> were isolated from the rhizosphere soils of <i>Tamarix chinensis</i> Lour. and <i>Alhagi camelorum</i> Fisch., respectively, in the Turpan-Hami Basin, Xinjiang, China. Both strains were Gram-stain-positive, oxidase-negative, catalase-positive, non-motile and rod-shaped. They were capable of growing at 4-45 ℃ and at pH 7.0-8.0. Notably, strain SYSU DS0651<sup>T</sup> exhibited the ability to hydrolyse both casein and gelatin, while SYSU DS0663<sup>T</sup> demonstrated urease activity. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strains SYSU DS0651<sup>T</sup> and SYSU DS0663<sup>T</sup> belong to the genus <i>Nocardioides,</i> showing the highest sequence similarities to <i>Nocardioides vastitatis</i> 21Sc5-5<sup>T</sup> (98.13%) and <i>Nocardioides oceani</i> SOB77<sup>T</sup> (98.13%), respectively. The genome sizes of strains SYSU DS0651<sup>T</sup> and SYSU DS0663<sup>T</sup> were 3,919,402 and 3,985,477 bp, respectively, with DNA G+C contents of 72.7% and 73.0 %. The average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values between the two strains and their closest relatives were below the species-delineation thresholds (ANI: 95-96%; dDDH: 70%). A polyphasic taxonomic analysis revealed that strains SYSU DS0651<sup>T</sup> and SYSU DS0663<sup>T</sup> represent two novel species within the genus <i>Nocardioides</i>. Therefore, the names <i>Nocardioides proteolyticus</i> sp. nov. (type strain SYSU DS0651<sup>T</sup>=MCCC 1K09396<sup>T</sup>=KCTC 59499<sup>T</sup>) and <i>Nocardioides ureilyticus</i> sp. nov. (type strain SYSU DS0663<sup>T</sup>=MCCC 1K09407<sup>T</sup>=KCTC 59500<sup>T</sup>) are proposed.

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INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Published
2025-12-17
DOI
https://doi.org/10.1099/ijsem.0.007006
Primary Topic
Genomics and Phylogenetic Studies
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article

Nocardioides proteolyticus sp. nov. and Nocardioides ureilyticus sp. nov., isolated from desert rhizosphere soils

Jie Huang, Zhipei Ling, Shuai Li, Ting‐Ting She et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
Genomics and Phylogenetic Studies
article

Nocardioides proteolyticus sp. nov. and Nocardioides ureilyticus sp. nov., isolated from desert rhizosphere soils

Jie Huang, Zhipei Ling, Shuai Li, Ting‐Ting She, Jun Liu, Wen‐Jun Li, Lei Hua Dong, Yating Deng, Lijia Huang
article en

Abstract

Strains SYSU DS0651<sup>T</sup> and SYSU DS0663<sup>T</sup> were isolated from the rhizosphere soils of <i>Tamarix chinensis</i> Lour. and <i>Alhagi camelorum</i> Fisch., respectively, in the Turpan-Hami Basin, Xinjiang, China. Both strains were Gram-stain-positive, oxidase-negative, catalase-positive, non-motile and rod-shaped. They were capable of growing at 4-45 ℃ and at pH 7.0-8.0. Notably, strain SYSU DS0651<sup>T</sup> exhibited the ability to hydrolyse both casein and gelatin, while SYSU DS0663<sup>T</sup> demonstrated urease activity. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strains SYSU DS0651<sup>T</sup> and SYSU DS0663<sup>T</sup> belong to the genus <i>Nocardioides,</i> showing the highest sequence similarities to <i>Nocardioides vastitatis</i> 21Sc5-5<sup>T</sup> (98.13%) and <i>Nocardioides oceani</i> SOB77<sup>T</sup> (98.13%), respectively. The genome sizes of strains SYSU DS0651<sup>T</sup> and SYSU DS0663<sup>T</sup> were 3,919,402 and 3,985,477 bp, respectively, with DNA G+C contents of 72.7% and 73.0 %. The average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values between the two strains and their closest relatives were below the species-delineation thresholds (ANI: 95-96%; dDDH: 70%). A polyphasic taxonomic analysis revealed that strains SYSU DS0651<sup>T</sup> and SYSU DS0663<sup>T</sup> represent two novel species within the genus <i>Nocardioides</i>. Therefore, the names <i>Nocardioides proteolyticus</i> sp. nov. (type strain SYSU DS0651<sup>T</sup>=MCCC 1K09396<sup>T</sup>=KCTC 59499<sup>T</sup>) and <i>Nocardioides ureilyticus</i> sp. nov. (type strain SYSU DS0663<sup>T</sup>=MCCC 1K09407<sup>T</sup>=KCTC 59500<sup>T</sup>) are proposed.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGYVol. 75(12)
Sun Yat-sen University (CN), Guangdong University of Education (CN), Institute of Ecology and Geography (MD), Xinjiang Institute of Ecology and Geography (CN)
Openalex Percentile: Top 63%
Genomics and Phylogenetic Studies
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