Exploring shaped focused ion beams for lamella preparation

Focused ion beams (FIB) are widely used instruments in transmission electron microscopy (TEM) sample preparation across scientific disciplines. Generally, site-specific ablation of material is achieved by scanning a highly focused probe across a selected area, leading to the removal of material. However, the geometries of TEM lamellae milled with the FIB are usually highly non-isometric, with their thickness generally being orders of magnitude smaller than their width and length. Here, we explore a changed probe shape for milling. Instead of using an ion beam with the standard, Gaussian-like probe, we characterize the use of the stigmator as quasi-cylindrical lens to create a highly astigmatic probe that we term 'ion knife'. Using the ion knife allows for material removal by spreading the current over a larger area and changes the dimension of the probe as observed in spot burn cross-sections. To allow for rapid alignment of parameters in beam shaping, we demonstrate a method to approximate the shapes of our probes by imaging. Finally, exploring shaped probes in cryogenic lamella preparation, we demonstrate the feasibility of cellular lamella milling and sectioning of cryo-lift-out volumes with the ion knife.

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Publication Details

Journal
Ultramicroscopy
Published
2025-12-18
DOI
https://doi.org/10.1016/j.ultramic.2025.114302
Primary Topic
Advanced Electron Microscopy Techniques and Applications
Type
article
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article

Exploring shaped focused ion beams for lamella preparation

Johann Brenner, Sven Klumpe, Jürgen M. Plitzko
Ultramicroscopy
Advanced Electron Microscopy Techniques and Applications
article

Exploring shaped focused ion beams for lamella preparation

Johann Brenner, Sven Klumpe, Jürgen M. Plitzko
article en

Abstract

Focused ion beams (FIB) are widely used instruments in transmission electron microscopy (TEM) sample preparation across scientific disciplines. Generally, site-specific ablation of material is achieved by scanning a highly focused probe across a selected area, leading to the removal of material. However, the geometries of TEM lamellae milled with the FIB are usually highly non-isometric, with their thickness generally being orders of magnitude smaller than their width and length. Here, we explore a changed probe shape for milling. Instead of using an ion beam with the standard, Gaussian-like probe, we characterize the use of the stigmator as quasi-cylindrical lens to create a highly astigmatic probe that we term 'ion knife'. Using the ion knife allows for material removal by spreading the current over a larger area and changes the dimension of the probe as observed in spot burn cross-sections. To allow for rapid alignment of parameters in beam shaping, we demonstrate a method to approximate the shapes of our probes by imaging. Finally, exploring shaped probes in cryogenic lamella preparation, we demonstrate the feasibility of cellular lamella milling and sectioning of cryo-lift-out volumes with the ion knife.

UltramicroscopyVol. 282
Max Planck Institute of Biophysics (DE), Max Planck Institute of Biochemistry (DE)
Openalex Percentile: Top 80%
Advanced Electron Microscopy Techniques and Applications
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