Structural insights into C3 convertase activity of the classical pathway of complement

Immune protection by the complement system depends on C3 cleavage by C3 convertases that is critical to all three activation pathways. Structural data on convertase formation in the classical pathway and on C3-substrate binding to convertases is lacking. We present the cryo-EM structures of the proconvertase (C4b2), convertase (C4b2b), and convertase-substrate complex (C4b2b-C3) of the classical pathway. The data show that C2 and C4b form proconvertases and convertases like factor B and C3b of the alternative pathway. Substrate C3 binds C4b of the convertase through two interfaces: one also found in the SCIN-inhibited C3bBb dimer, and another facilitated by conformational changes in C3. Bending of C3 and swinging of the C2 protease bring the C3-scissile loop into the active site. The second, charged, C4b-interaction site favors C3- substrate binding, but upon cleavage repels product C3b. Thus, a charge switch-over mechanism effects the catalytic turnover of the convertases producing opsonin C3b.

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Journal
Nature Communications
Published
2025-12-18
DOI
https://doi.org/10.1038/s41467-025-67730-4
Primary Topic
Complement system in diseases
Type
article
Field-Weighted Citation Impact
0.00

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article

Structural insights into C3 convertase activity of the classical pathway of complement

Itziar Serna Martin, Piet Gros, Karla I. De la O Becerra, T. Harma C. Brondijk
Nature Communications
Complement system in diseases
article

Structural insights into C3 convertase activity of the classical pathway of complement

Itziar Serna Martin, Piet Gros, Karla I. De la O Becerra, T. Harma C. Brondijk
article en

Abstract

Immune protection by the complement system depends on C3 cleavage by C3 convertases that is critical to all three activation pathways. Structural data on convertase formation in the classical pathway and on C3-substrate binding to convertases is lacking. We present the cryo-EM structures of the proconvertase (C4b2), convertase (C4b2b), and convertase-substrate complex (C4b2b-C3) of the classical pathway. The data show that C2 and C4b form proconvertases and convertases like factor B and C3b of the alternative pathway. Substrate C3 binds C4b of the convertase through two interfaces: one also found in the SCIN-inhibited C3bBb dimer, and another facilitated by conformational changes in C3. Bending of C3 and swinging of the C2 protease bring the C3-scissile loop into the active site. The second, charged, C4b-interaction site favors C3- substrate binding, but upon cleavage repels product C3b. Thus, a charge switch-over mechanism effects the catalytic turnover of the convertases producing opsonin C3b.

Nature CommunicationsVol. 17(1)
University of Applied Sciences Utrecht (NL), Utrecht University (NL), Thermo Fisher Scientific (Netherlands) (NL)
Netherlands Centre for Electron Nanoscopy, European Commission, Universiteit Utrecht, Consejo Nacional de Ciencia y Tecnología, Nederlandse Organisatie voor Wetenschappelijk Onderzoek, Horizon 2020 Framework Programme
Openalex Percentile: Top 54%
Complement system in diseases
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Structural insights into C3 convertase activity of the classical pathway of complement — Itziar Serna Martin, Piet Gros, et al. · Nature Communications (2025) | TGRS Research Map | TGRS