Enhancing Soil Biological Health in a Rice–Wheat Cropping Sequence Using Rock Phosphate-Enriched Compost and Microbial Inoculants

Limited phosphorus (P) availability and declining soil biological health are major constraints in intensive rice (Oryza sativa L.)—wheat (Triticum aestivum L.) systems. Rock phosphate–enriched compost (REC), combined with microbial inoculants, offers a sustainable strategy for improving soil biological functioning. A field experiment was conducted under a randomized block design with seven treatments involving different combinations of REC, chemical fertilizers, phosphate-solubilizing bacteria (PSB), and arbuscular mycorrhizal fungi (AMF). Post-harvest soil samples from rice and wheat were analyzed for microbial biomass carbon (MBC), microbial biomass phosphorus (MBP), enzymatic activities, microbial populations, root colonization, yield, and P uptake. The combined application of REC with PSB and AMF significantly enhanced soil biological parameters compared with recommended fertilizer doses. Under the REC + PSB + AMF treatment, dehydrogenase, acid phosphatase, and alkaline phosphatase activities increased by 77.4%, 24.8%, and 18.1%, respectively, while MBC and MBP improved by 51.6% and 106.6%. Bacteria, fungi, and actinomycete population increased by 55.0%, 76.7%, and 82.8%, respectively, as well as mycorrhizal root colonization increased by 18.7%. Grain yield of rice and wheat increased by 16% and 6%, respectively, along with higher P uptake. The integrated use of REC with PSB and AMF improved soil enzymatic activity, microbial biomass, and nutrient acquisition, leading to higher crop productivity. These results indicate that REC combined with PSB and AMF is an effective nutrient management strategy for improving soil biological health, P utilization, and crop productivity in rice–wheat systems.