ColorSTEM: An easy and convenient approach to Multicolor Electron Microscopy of Labeled Biological Specimens

A new method for Multicolor Electron Microscopy (EM) using scanning transmission EM, ColorSTEM has been developed to increase the sensitivity, instrument availability and ease of use compared to that previously developed using electron energy loss spectroscopy and energy filtered transmission EM. Both methods paint multiple subcellular complexes with different colors, enabled by the localized and targeted deposition of diaminobenzidine (DAB) conjugated to different metals, which provides the differentiating signal from each other. With ColorSTEM, elastic scattering that is dependent upon atomic weight (Z-contrast) has far greater signals. Using deposited DAB with copper or gold to label subcellular components, Z-contrast imaging generates a pseudo-elemental map, resulting from differences in the grayscale of the conventional STEM images.

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Publication Details

Journal
bioRxiv (Cold Spring Harbor Laboratory)
Published
2025-12-17
DOI
https://doi.org/10.64898/2025.12.15.694448
Primary Topic
Advanced Electron Microscopy Techniques and Applications
Type
article
Field-Weighted Citation Impact
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article

ColorSTEM: An easy and convenient approach to Multicolor Electron Microscopy of Labeled Biological Specimens

Ranjan Ramachandra, I. Rodrı́guez-Ramos, T. Shone, Mark H. Ellisman et al.
bioRxiv (Cold Spring Harbor Laboratory)
Advanced Electron Microscopy Techniques and Applications
article

ColorSTEM: An easy and convenient approach to Multicolor Electron Microscopy of Labeled Biological Specimens

Ranjan Ramachandra, I. Rodrı́guez-Ramos, T. Shone, Mark H. Ellisman, Junru Hu, Marcos I. Flores, Stephen Adams, Steven T. Peltier, Mason R Mackay
article en

Abstract

A new method for Multicolor Electron Microscopy (EM) using scanning transmission EM, ColorSTEM has been developed to increase the sensitivity, instrument availability and ease of use compared to that previously developed using electron energy loss spectroscopy and energy filtered transmission EM. Both methods paint multiple subcellular complexes with different colors, enabled by the localized and targeted deposition of diaminobenzidine (DAB) conjugated to different metals, which provides the differentiating signal from each other. With ColorSTEM, elastic scattering that is dependent upon atomic weight (Z-contrast) has far greater signals. Using deposited DAB with copper or gold to label subcellular components, Z-contrast imaging generates a pseudo-elemental map, resulting from differences in the grayscale of the conventional STEM images.

bioRxiv (Cold Spring Harbor Laboratory)
University of California San Diego (US)
Openalex Percentile: Top 80%
Advanced Electron Microscopy Techniques and Applications
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