Advancing Efficient Error Reduction in DNA Data Storage Systems with Deep Learning‐Based Denoising Models

DNA data storage systems have made significant strides toward addressing the limitations of traditional storage media. Research in this field emphasizes innovative approaches that leverage the biochemical properties of DNA for high‐density and efficient data storage with minimal errors. This study explores the enhancement of error reduction in DNA‐based data storage systems using deep learning techniques, specifically denoising convolutional neural networks (DnCNN). This approach integrates image denoising using DnCNN models to improve the quality of images encoded into DNA sequences that are prone to errors during synthesis and sequencing. Two DNA base sequence encoding models, R ∞ ‐P8 and R 1 ‐P8, are used to assess their impact on decoded image quality. Extensive experiments reveal that the DnCNN models significantly enhance image quality, as indicated by the peak signal‐to‐noise ratio (PSNR) and structural similarity index measure (SSIM) metrics. This study demonstrates the ability of DnCNN models to correct up to 96% of substitution errors, marking a substantial improvement in data fidelity. These findings highlight the potential of combining machine learning with DNA data storage technologies to achieve higher accuracy and reliability, thereby paving the way for more robust DNA‐based storage solutions.

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Publication Details

Journal
Advanced Intelligent Discovery
Published
2025-12-17
DOI
https://doi.org/10.1002/aidi.202500166
Citations
1
Primary Topic
DNA and Biological Computing
Type
article
Field-Weighted Citation Impact
0.81
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Advancing Efficient Error Reduction in DNA Data Storage Systems with Deep Learning‐Based Denoising Models

Nguyen Kim Uyen, Jee‐Hyong Lee, Anshula Tandon, Quoc V. Le et al.
1 citations
Advanced Intelligent Discovery
DNA and Biological Computing
0.81
article

Advancing Efficient Error Reduction in DNA Data Storage Systems with Deep Learning‐Based Denoising Models

Nguyen Kim Uyen, Jee‐Hyong Lee, Anshula Tandon, Quoc V. Le, Seongjun Seo, Sung Ha Park
article en
1 citations

Abstract

DNA data storage systems have made significant strides toward addressing the limitations of traditional storage media. Research in this field emphasizes innovative approaches that leverage the biochemical properties of DNA for high‐density and efficient data storage with minimal errors. This study explores the enhancement of error reduction in DNA‐based data storage systems using deep learning techniques, specifically denoising convolutional neural networks (DnCNN). This approach integrates image denoising using DnCNN models to improve the quality of images encoded into DNA sequences that are prone to errors during synthesis and sequencing. Two DNA base sequence encoding models, R ∞ ‐P8 and R 1 ‐P8, are used to assess their impact on decoded image quality. Extensive experiments reveal that the DnCNN models significantly enhance image quality, as indicated by the peak signal‐to‐noise ratio (PSNR) and structural similarity index measure (SSIM) metrics. This study demonstrates the ability of DnCNN models to correct up to 96% of substitution errors, marking a substantial improvement in data fidelity. These findings highlight the potential of combining machine learning with DNA data storage technologies to achieve higher accuracy and reliability, thereby paving the way for more robust DNA‐based storage solutions.

Advanced Intelligent Discovery
Sungkyunkwan University (KR)
Openalex Percentile: Top 21%
DNA and Biological Computing
0.81
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Advancing Efficient Error Reduction in DNA Data Storage Systems with Deep Learning‐Based Denoising Models — Nguyen Kim Uyen, Jee‐Hyong Lee, et al. · Advanced Intelligent Discovery (2025) | TGRS Research Map | TGRS