Comparative Analysis of Chloroplast Genomes in Sansevieria Reveals Phylogenetic Relationships and High Variability Molecular Markers

Sansevieria, a perennial herb known for its ornamental and medicinal value, has many varieties due to its leaf size and stripe color. However, it is very difficult to distinguish them during the seedling stage. In this study, we conducted chloroplast genome sequencing analysis on 10 cultivars of Sansevieria trifasciata. The chloroplast genomes exhibited a typical quadripartite circular structure (154.2–158.7 kb), encoding 113 functional genes with highly conserved gene order. Phylogenetic analysis supported the evolutionary linkage between Sansevieria and Dracaena. Dynamic inverted repeats (IR) boundary expansions/contractions, particularly species-specific patterns in ndhF and rps19 gene distributions across IR junctions, indicating its adaptive divergence. We also discovered the trnT-psbD marker, which is a deletion marker developed from hypervariable regions and can effectively distinguish closely related species. This work provides critical molecular tools and theoretical foundations for germplasm identification, phylogenetic reconstruction, and chloroplast genome evolution in Sansevieria, and also promotes taxonomic revisions in Asparagaceae.