Bridging a Gap in Marine Sulfur Cycling: Discovery of a <scp>d</scp> -Cysteinolic Acid Degradation Pathway

d-Cysteinolic acid is a prominent sulfur-containing compound in marine and freshwater ecosystems, yet its metabolic fate has remained largely uncharacterized. Here, we describe a newly identified d-cysteinolic acid degradation pathway in a marine model bacterium <i>Ruegeria pomeroyi</i> DSS-3. This pathway involves a PLP-dependent cysteinolic acid racemase (ClaA) that interconverts d- and l-cysteinolic acids, followed by a NAD<sup>+</sup>-dependent l-cysteinolic acid dehydrogenase (ClaB) that oxidizes l-cysteinolic acid to l-cysteate. A cysteate racemase (CuyB) then converts l-cysteate to d-cysteate, the preferred substrate for the sulfolyase CuyA. Bioinformatic analysis of the Tara Oceans gene atlas reveals that ClaA and CuyA homologues are widespread in marine bacterial populations, particularly within the alphaproteobacterial Roseobacter and SAR116 groups and the gammaproteobacterial SUP05 clade. Relative abundance of gene homologues correlates with surface water chlorophyll levels, linking d-cysteinolic acid degradation to photosynthetic primary production. This discovery advances our understanding of marine sulfur cycling and highlights d-cysteinolic acid as an important metabolic currency in microbial networks.

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Journal
Journal of the American Chemical Society
Published
2025-12-17
DOI
https://doi.org/10.1021/jacs.5c11066
Primary Topic
Nitrogen and Sulfur Effects on Brassica
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article
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article

Bridging a Gap in Marine Sulfur Cycling: Discovery of a d -Cysteinolic Acid Degradation Pathway

Mahima Sharma, Bryndan P. Durham, G.J. Davies, Adam W. E. Stewart et al.
Journal of the American Chemical Society
Nitrogen and Sulfur Effects on Brassica
article

Bridging a Gap in Marine Sulfur Cycling: Discovery of a d -Cysteinolic Acid Degradation Pathway

Mahima Sharma, Bryndan P. Durham, G.J. Davies, Adam W. E. Stewart, Spencer J. Williams, Luise Pallasdies, Nichollas E. Scott, Laura Burchill, Lisa S. Y. Coe, Malcolm J. McConville, Leila Jebeli, Mihwa Lee, Vinzenz Hofferek, Luca Zudich
article en

Abstract

d-Cysteinolic acid is a prominent sulfur-containing compound in marine and freshwater ecosystems, yet its metabolic fate has remained largely uncharacterized. Here, we describe a newly identified d-cysteinolic acid degradation pathway in a marine model bacterium <i>Ruegeria pomeroyi</i> DSS-3. This pathway involves a PLP-dependent cysteinolic acid racemase (ClaA) that interconverts d- and l-cysteinolic acids, followed by a NAD<sup>+</sup>-dependent l-cysteinolic acid dehydrogenase (ClaB) that oxidizes l-cysteinolic acid to l-cysteate. A cysteate racemase (CuyB) then converts l-cysteate to d-cysteate, the preferred substrate for the sulfolyase CuyA. Bioinformatic analysis of the Tara Oceans gene atlas reveals that ClaA and CuyA homologues are widespread in marine bacterial populations, particularly within the alphaproteobacterial Roseobacter and SAR116 groups and the gammaproteobacterial SUP05 clade. Relative abundance of gene homologues correlates with surface water chlorophyll levels, linking d-cysteinolic acid degradation to photosynthetic primary production. This discovery advances our understanding of marine sulfur cycling and highlights d-cysteinolic acid as an important metabolic currency in microbial networks.

Journal of the American Chemical SocietyVol. 147(52)
Biotechnology Institute (US), The University of Melbourne (AU), University of Florida (US), New York Structural Biology Center (US), Peter Doherty Institute (AU), Institute of Human Genetics (PL), Institute of Genetics (CA), Institute of Genetics (HU), University of York (GB)
Openalex Percentile: Top 63%
Nitrogen and Sulfur Effects on Brassica
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