Genetic Diversity and Population Structure of Rumex crispus in South Korea Based on Genome-Derived Microsatellite Markers

<i>Rumex crispus</i> L. is a globally distributed invasive species that has naturalized in South Korea, where its use as a medicinal, edible, and ecological restoration resource continues to expand. However, its genetic background remains insufficiently understood, underscoring the need for species-specific molecular markers to enable accurate assessments of intraspecific genetic diversity and population structure. Using 19 newly developed microsatellite markers, we analyzed 120 plants from 6 populations in the riparian zone. A total of 166 alleles were detected, with a mean polymorphism information content of 0.637. Across the six populations, genetic diversity analysis showed mean observed (Ho = 0.304) and expected (He = 0.588) heterozygosity values indicative of heterozygote deficiency (inbreeding coefficient F<sub>IS</sub> = 0.456-0.559). Genetic differentiation was low in AMOVA (10%) and F<sub>ST</sub> (0.048-0.120) but higher in Jost's D (0.096-0.342). STRUCTURE analysis identified two major genetic clusters (ΔK = 2), and spatial Bayesian clustering revealed six distinct genetic units (K = 6), suggesting that partial barriers to gene flow may have influenced population structure. These findings provide essential genetic insights that can support the effective control of <i>R. crispus</i> spread and its potential use as a valuable plant resource.

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Journal
Plants
Published
2025-12-14
DOI
https://doi.org/10.3390/plants14243806
Primary Topic
Genetic diversity and population structure
Type
article
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article

Genetic Diversity and Population Structure of Rumex crispus in South Korea Based on Genome-Derived Microsatellite Markers

Kang-Rae Kim, Jaeduk Goh, Jun Seong Jeong, Mihwa Lee et al.
Plants
Genetic diversity and population structure
article

Genetic Diversity and Population Structure of Rumex crispus in South Korea Based on Genome-Derived Microsatellite Markers

Kang-Rae Kim, Jaeduk Goh, Jun Seong Jeong, Mihwa Lee, Eunhye Kim, Jeong-Nam Yu, Yujin Hwang
article en

Abstract

<i>Rumex crispus</i> L. is a globally distributed invasive species that has naturalized in South Korea, where its use as a medicinal, edible, and ecological restoration resource continues to expand. However, its genetic background remains insufficiently understood, underscoring the need for species-specific molecular markers to enable accurate assessments of intraspecific genetic diversity and population structure. Using 19 newly developed microsatellite markers, we analyzed 120 plants from 6 populations in the riparian zone. A total of 166 alleles were detected, with a mean polymorphism information content of 0.637. Across the six populations, genetic diversity analysis showed mean observed (Ho = 0.304) and expected (He = 0.588) heterozygosity values indicative of heterozygote deficiency (inbreeding coefficient F<sub>IS</sub> = 0.456-0.559). Genetic differentiation was low in AMOVA (10%) and F<sub>ST</sub> (0.048-0.120) but higher in Jost's D (0.096-0.342). STRUCTURE analysis identified two major genetic clusters (ΔK = 2), and spatial Bayesian clustering revealed six distinct genetic units (K = 6), suggesting that partial barriers to gene flow may have influenced population structure. These findings provide essential genetic insights that can support the effective control of <i>R. crispus</i> spread and its potential use as a valuable plant resource.

PlantsVol. 14(24)
National Institute of Biological Resources (KR), National Institute of Fisheries Science (KR), NOAA National Marine Fisheries Service Southeast Fisheries Science Center (US)
Openalex Percentile: Top 58%
Genetic diversity and population structure
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Genetic Diversity and Population Structure of Rumex crispus in South Korea Based on Genome-Derived Microsatellite Markers — Kang-Rae Kim, Jaeduk Goh, et al. · Plants (2025) | TGRS Research Map | TGRS