ChemOrigins: a community-curated database for origins-of-life chemistry
Abstract The origin of life is one of the most compelling questions in science. While experimental prebiotic chemistry has produced a wide range of reactions and plausible pathways, the resulting data remain fragmented across numerous publications and disciplinary journals. Here, we introduce ChemOrigins, an open access, community-curated knowledge graph that organizes experimentally supported prebiotic reactions. By representing molecules, reactions, conditions and literature sources as interconnected nodes, ChemOrigins enables modular grouping of reactions and supports complex, query-driven exploration via a graph database architecture. We demonstrate the utility of this framework through text-based searches, reaction network expansions and the interactive visualization of user-annotated chemical modules. Unlike generative models, ChemOrigins prioritizes curated, evidence-based content and fosters community contributions through expert annotations and a user-friendly interface. As a structured resource, ChemOrigins is designed to complement existing chemical databases and serve as a foundation for computational, educational and theoretical research in the origins-of-life field.
Authors
- Zachary R. Adam (ORCID: https://orcid.org/0000-0002-3141-8480)
- Bruno Cuevas-Zuviría (ORCID: https://orcid.org/0000-0003-1479-9442)
- Daniel Cove
- Betül Kaçar (ORCID: https://orcid.org/0000-0002-0482-2357)
Institutions
- University of Wisconsin–Madison (US)
- Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (ES)
Publication Details
- Journal
- Interface Focus
- Published
- 2025-12-12
- DOI
- https://doi.org/10.1098/rsfs.2025.0034
- Citations
- 1
- Primary Topic
- Origins and Evolution of Life
- Type
- article
- Field-Weighted Citation Impact
- 1.15
Funders
- National Aeronautics and Space Administration
- Indian Council of Agricultural Research