ChemOrigins: a community-curated database for origins-of-life chemistry

Abstract The origin of life is one of the most compelling questions in science. While experimental prebiotic chemistry has produced a wide range of reactions and plausible pathways, the resulting data remain fragmented across numerous publications and disciplinary journals. Here, we introduce ChemOrigins, an open access, community-curated knowledge graph that organizes experimentally supported prebiotic reactions. By representing molecules, reactions, conditions and literature sources as interconnected nodes, ChemOrigins enables modular grouping of reactions and supports complex, query-driven exploration via a graph database architecture. We demonstrate the utility of this framework through text-based searches, reaction network expansions and the interactive visualization of user-annotated chemical modules. Unlike generative models, ChemOrigins prioritizes curated, evidence-based content and fosters community contributions through expert annotations and a user-friendly interface. As a structured resource, ChemOrigins is designed to complement existing chemical databases and serve as a foundation for computational, educational and theoretical research in the origins-of-life field.

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Publication Details

Journal
Interface Focus
Published
2025-12-12
DOI
https://doi.org/10.1098/rsfs.2025.0034
Citations
1
Primary Topic
Origins and Evolution of Life
Type
article
Field-Weighted Citation Impact
1.15

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article

ChemOrigins: a community-curated database for origins-of-life chemistry

Zachary R. Adam, Bruno Cuevas-Zuviría, Daniel Cove, Betül Kaçar
1 citations
Interface Focus
Origins and Evolution of Life
1.15
article

ChemOrigins: a community-curated database for origins-of-life chemistry

Zachary R. Adam, Bruno Cuevas-Zuviría, Daniel Cove, Betül Kaçar
article en
1 citations

Abstract

Abstract The origin of life is one of the most compelling questions in science. While experimental prebiotic chemistry has produced a wide range of reactions and plausible pathways, the resulting data remain fragmented across numerous publications and disciplinary journals. Here, we introduce ChemOrigins, an open access, community-curated knowledge graph that organizes experimentally supported prebiotic reactions. By representing molecules, reactions, conditions and literature sources as interconnected nodes, ChemOrigins enables modular grouping of reactions and supports complex, query-driven exploration via a graph database architecture. We demonstrate the utility of this framework through text-based searches, reaction network expansions and the interactive visualization of user-annotated chemical modules. Unlike generative models, ChemOrigins prioritizes curated, evidence-based content and fosters community contributions through expert annotations and a user-friendly interface. As a structured resource, ChemOrigins is designed to complement existing chemical databases and serve as a foundation for computational, educational and theoretical research in the origins-of-life field.

Interface FocusVol. 15(5)
University of Wisconsin–Madison (US), Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (ES)
National Aeronautics and Space Administration, Indian Council of Agricultural Research
Openalex Percentile: Top 14%
Origins and Evolution of Life
1.15
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