Active loop extrusion modulates the mechanical response of chromatin under tension
Chromosomes are complex biopolymers folded into dynamic loops via a loop-extrusion process and may experience various mechanical forces . We develop a force-dependent model of chromatin loop extrusion and investigate its mechanical consequences on chromosome organization using simulations and analytical theory. We show that loop extrusion alters the force-extension behavior of DNA in a nonmonotonic manner: Extrusion stiffens the chain at low forces but softens it at intermediate and high forces. Our model predicts hysteresis in pulling-recoiling cycles and out-of-equilibrium responses, qualitatively consistent with recent single-chromosome stretching experiments. We further find that loop extrusion provides mechanical robustness to chromatin by promoting compaction while enabling rapid structural recovery after stress. These results establish loop extrusion as a key regulator of chromatin mechanics.
Authors
- Karl J. Friston
Institutions
- Université Claude Bernard Lyon 1 (FR)
- Université Paris Sciences et Lettres (FR)
- Sorbonne Université (FR)
- Laboratoire Médiations (FR)
- Institut Curie (FR)
Publication Details
- Journal
- Physical Review Research
- Published
- 2025-11-14
- DOI
- https://doi.org/10.1103/qfdv-vhv1
- Citations
- 2
- Primary Topic
- Genomics and Chromatin Dynamics
- Type
- article
- Field-Weighted Citation Impact
- 1.61