Active loop extrusion modulates the mechanical response of chromatin under tension

Chromosomes are complex biopolymers folded into dynamic loops via a loop-extrusion process and may experience various mechanical forces . We develop a force-dependent model of chromatin loop extrusion and investigate its mechanical consequences on chromosome organization using simulations and analytical theory. We show that loop extrusion alters the force-extension behavior of DNA in a nonmonotonic manner: Extrusion stiffens the chain at low forces but softens it at intermediate and high forces. Our model predicts hysteresis in pulling-recoiling cycles and out-of-equilibrium responses, qualitatively consistent with recent single-chromosome stretching experiments. We further find that loop extrusion provides mechanical robustness to chromatin by promoting compaction while enabling rapid structural recovery after stress. These results establish loop extrusion as a key regulator of chromatin mechanics.

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Publication Details

Journal
Physical Review Research
Published
2025-11-14
DOI
https://doi.org/10.1103/qfdv-vhv1
Citations
2
Primary Topic
Genomics and Chromatin Dynamics
Type
article
Field-Weighted Citation Impact
1.61
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article

Active loop extrusion modulates the mechanical response of chromatin under tension

Karl J. Friston
2 citations
Physical Review Research
Genomics and Chromatin Dynamics
1.61
article

Active loop extrusion modulates the mechanical response of chromatin under tension

Karl J. Friston
article en
2 citations

Abstract

Chromosomes are complex biopolymers folded into dynamic loops via a loop-extrusion process and may experience various mechanical forces . We develop a force-dependent model of chromatin loop extrusion and investigate its mechanical consequences on chromosome organization using simulations and analytical theory. We show that loop extrusion alters the force-extension behavior of DNA in a nonmonotonic manner: Extrusion stiffens the chain at low forces but softens it at intermediate and high forces. Our model predicts hysteresis in pulling-recoiling cycles and out-of-equilibrium responses, qualitatively consistent with recent single-chromosome stretching experiments. We further find that loop extrusion provides mechanical robustness to chromatin by promoting compaction while enabling rapid structural recovery after stress. These results establish loop extrusion as a key regulator of chromatin mechanics.

Physical Review ResearchVol. 8(1)
Université Claude Bernard Lyon 1 (FR), Université Paris Sciences et Lettres (FR), Sorbonne Université (FR), Laboratoire Médiations (FR), Institut Curie (FR)
Openalex Percentile: Top 14%
Genomics and Chromatin Dynamics
1.61
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Active loop extrusion modulates the mechanical response of chromatin under tension — Karl J. Friston · Physical Review Research (2025) | TGRS Research Map | TGRS