Synthesis of Small Libraries of Natural Products—Part III: Identification of New Esters from Pelargonium graveolens L’Her. (Geraniaceae) Essential Oil

<i>Pelargonium graveolens</i> (rose geranium) essential oil contains numerous aroma-active esters that are challenging to identify at low abundance. We obtained by preparative chromatography an ester-rich fraction of the essential oil and constructed a synthetic reference library of 159 structurally related esters (spectral/GC data provided; 102 newly synthesized). This enabled dereplication and detection of constituents not apparent in direct GC-MS of the unfractionated oil. Nine esters (5-methylhexyl formate, (<i>Z</i>)-hex-3-en-1-yl 3-methylpentanoate, 3-methylbutyl 3-methylpentanoate, 3-methylpentyl 4-methylpentanoate, 5-methylhexyl hexanoate, 3-methylbutyl 6-methylheptanoate, 2-phenylethyl 6-methylheptanoate, 5-methylhexyl tiglate, and 6-methylheptyl tiglate) were confirmed as new natural products (eight of them new compounds overall), by combined evidence from retention indices, EI mass spectra, co-injections with synthesized references, and, in selected cases, by 1D/2D NMR. Systematic RI trends across acid and alcohol isomers were delineated, aiding rapid differentiation of regio-isomeric esters that share similar EI patterns. This library-guided workflow offers a robust path to differentiate structurally close volatiles in complex matrices and provides transferable RI/spectral benchmarks for future natural product identification.

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Journal
Molecules
Published
2025-12-11
DOI
https://doi.org/10.3390/molecules30244741
Primary Topic
Molecular spectroscopy and chirality
Type
article
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article

Synthesis of Small Libraries of Natural Products—Part III: Identification of New Esters from Pelargonium graveolens L’Her. (Geraniaceae) Essential Oil

Niko S. Radulović, Marko Z. Mladenović, Šejla F. Gusinac Avdović
Molecules
Molecular spectroscopy and chirality
article

Synthesis of Small Libraries of Natural Products—Part III: Identification of New Esters from Pelargonium graveolens L’Her. (Geraniaceae) Essential Oil

Niko S. Radulović, Marko Z. Mladenović, Šejla F. Gusinac Avdović
article en

Abstract

<i>Pelargonium graveolens</i> (rose geranium) essential oil contains numerous aroma-active esters that are challenging to identify at low abundance. We obtained by preparative chromatography an ester-rich fraction of the essential oil and constructed a synthetic reference library of 159 structurally related esters (spectral/GC data provided; 102 newly synthesized). This enabled dereplication and detection of constituents not apparent in direct GC-MS of the unfractionated oil. Nine esters (5-methylhexyl formate, (<i>Z</i>)-hex-3-en-1-yl 3-methylpentanoate, 3-methylbutyl 3-methylpentanoate, 3-methylpentyl 4-methylpentanoate, 5-methylhexyl hexanoate, 3-methylbutyl 6-methylheptanoate, 2-phenylethyl 6-methylheptanoate, 5-methylhexyl tiglate, and 6-methylheptyl tiglate) were confirmed as new natural products (eight of them new compounds overall), by combined evidence from retention indices, EI mass spectra, co-injections with synthesized references, and, in selected cases, by 1D/2D NMR. Systematic RI trends across acid and alcohol isomers were delineated, aiding rapid differentiation of regio-isomeric esters that share similar EI patterns. This library-guided workflow offers a robust path to differentiate structurally close volatiles in complex matrices and provides transferable RI/spectral benchmarks for future natural product identification.

MoleculesVol. 30(24)
University of Nis (RS), State University of Novi Pazar (RS)
Openalex Percentile: Top 64%
Molecular spectroscopy and chirality
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Synthesis of Small Libraries of Natural Products—Part III: Identification of New Esters from Pelargonium graveolens L’Her. (Geraniaceae) Essential Oil — Niko S. Radulović, Marko Z. Mladenović, et al. · Molecules (2025) | TGRS Research Map | TGRS