Fault-Tolerant Stabilizer Measurements in Surface Codes with Three-Qubit Gates

Stabilizer quantum error correction (QEC) codes, in particular topological surface codes, are prime candidates to enable practical quantum computing. While it is widely believed that strictly fault-tolerant protocols can only be implemented using single- and two-qubit gates, several quantum computing platforms, including trapped ions, neutral atoms, and superconducting qubits, support native multi-qubit operations. In this Letter, we show that stabilizer measurement circuits for unrotated surface codes can be fault tolerant using single auxiliary qubits and three-qubit gates. These gates enable lower-depth circuits with fewer fault locations and potentially shorter QEC cycle times. We find that in an optimistic parameter regime where fidelities of three-qubit gates are the same as those of two-qubit gates, the logical error rate can be up to one order of magnitude lower and the threshold significantly higher, increasing from ≈0.63% to ≈0.83%. Our results, applicable to a wide range of platforms, motivate further investigation into multi-qubit gates for fault-tolerant QEC as they can offer substantial time and physical qubit resource advantages to reach a given target logical error rate.