Complete genome sequence of Pseudolactococcus raffinolactis strain GCULR from a spotted seal (Phoca largha) in Korea

P. raffinolactis strain GCULR was isolated from a stranded spotted seal in Korea, and its whole genome was sequenced using PacBio and Illumina X-10 platforms. Its complete genome comprises a single circular chromosome of 2,270,555 bp with 39.9% GC content and no plasmids. Annotation revealed 2,260 genes, including 2,145 protein-coding sequences, 56 transfer RNAs, 13 ribosomal RNAs, 3 non-coding RNAs, and 43 pseudogenes. Comparative analysis showed an average nucleotide identity of 99.3% with strain WiKim0068, confirming its close relationship with a food-derived isolate. Genome-based screening revealed the presence of several potential virulence- and antimicrobial resistance-associated genes and two intact prophage regions. AntiSMASH analysis predicted a conserved bacteriocin biosynthetic cluster, indicating its functional potential. These findings offer novel insights into the beneficial bacteria in endangered marine mammals and expand our understanding of the ecological and functional diversity of P. raffinolactis.

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Publication Details

Journal
BMC Genomic Data
Published
2025-12-08
DOI
https://doi.org/10.1186/s12863-025-01381-8
Primary Topic
Aquaculture disease management and microbiota
Type
article
Field-Weighted Citation Impact
0.00

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article

Complete genome sequence of Pseudolactococcus raffinolactis strain GCULR from a spotted seal (Phoca largha) in Korea

Kyunglee Lee, Soo-Keun Choi, Youngwan Seo, Sang-seok Lee et al.
BMC Genomic Data
Aquaculture disease management and microbiota
article

Complete genome sequence of Pseudolactococcus raffinolactis strain GCULR from a spotted seal (Phoca largha) in Korea

Kyunglee Lee, Soo-Keun Choi, Youngwan Seo, Sang-seok Lee, Keeman Lee, Ji Hyung Kim, Se‐Jin Lim, Seon Young Park, Tae Seon
article en

Abstract

P. raffinolactis strain GCULR was isolated from a stranded spotted seal in Korea, and its whole genome was sequenced using PacBio and Illumina X-10 platforms. Its complete genome comprises a single circular chromosome of 2,270,555 bp with 39.9% GC content and no plasmids. Annotation revealed 2,260 genes, including 2,145 protein-coding sequences, 56 transfer RNAs, 13 ribosomal RNAs, 3 non-coding RNAs, and 43 pseudogenes. Comparative analysis showed an average nucleotide identity of 99.3% with strain WiKim0068, confirming its close relationship with a food-derived isolate. Genome-based screening revealed the presence of several potential virulence- and antimicrobial resistance-associated genes and two intact prophage regions. AntiSMASH analysis predicted a conserved bacteriocin biosynthetic cluster, indicating its functional potential. These findings offer novel insights into the beneficial bacteria in endangered marine mammals and expand our understanding of the ecological and functional diversity of P. raffinolactis.

BMC Genomic DataVol. 26(1)
Gachon University (KR), Seoul National University (KR), National Institute of Fisheries Science (KR), Animal and Plant Quarantine Agency (KR)
National Research Foundation, Ministry of Oceans and Fisheries, National Research Foundation of Korea, National Institute of Fisheries Science, Korea Institute of Marine Science and Technology promotion, Ministry of Science and ICT, South Korea
Openalex Percentile: Top 55%
Aquaculture disease management and microbiota
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Complete genome sequence of Pseudolactococcus raffinolactis strain GCULR from a spotted seal (Phoca largha) in Korea — Kyunglee Lee, Soo-Keun Choi, et al. · BMC Genomic Data (2025) | TGRS Research Map | TGRS