Learning image derived PDE-phenotypes from fMRI data

Partial differential equations (PDEs) model various physical phenomena, such as electromagnetic fields and fluid mechanics. Methods such as sparse identification of nonlinear dynamics (SINDy) and PDE-Net 2.0 have been developed to identify and model PDEs on the basis of data via sparse optimization and deep neural networks, respectively. While PDE models are less commonly applied to fMRI data, they have the potential to uncover hidden connections and essential components in brain activity. Using the ADHD200 dataset, we applied canonical independent component analysis (CanICA) and uniform manifold approximation (UMAP) for dimensionality reduction of fMRI data. We then used sparse ridge regression to identify PDEs from the reduced data, and applied significant PDE features for classification achieving high accuracy in distinguishing individuals with attention deficit hyperactivity disorder (ADHD). This study demonstrates a novel approach for extracting meaningful features from fMRI data for neurological disorder analysis to understand the role of oxygen transport (delivery & consumption) in the brain during neural activity, which is relevant for studying intracranial pathologies.

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Publication Details

Journal
Brain Informatics
Published
2025-12-01
DOI
https://doi.org/10.1186/s40708-025-00283-w
Primary Topic
Functional Brain Connectivity Studies
Type
article
Field-Weighted Citation Impact
0.00

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article

Learning image derived PDE-phenotypes from fMRI data

Wanhua Su, Qingrun Zhang, Zhichun Zhai, Rui Hu et al.
Brain Informatics
Functional Brain Connectivity Studies
article

Learning image derived PDE-phenotypes from fMRI data

Wanhua Su, Qingrun Zhang, Zhichun Zhai, Rui Hu, Ion Bica, Ryan Trang
article en

Abstract

Partial differential equations (PDEs) model various physical phenomena, such as electromagnetic fields and fluid mechanics. Methods such as sparse identification of nonlinear dynamics (SINDy) and PDE-Net 2.0 have been developed to identify and model PDEs on the basis of data via sparse optimization and deep neural networks, respectively. While PDE models are less commonly applied to fMRI data, they have the potential to uncover hidden connections and essential components in brain activity. Using the ADHD200 dataset, we applied canonical independent component analysis (CanICA) and uniform manifold approximation (UMAP) for dimensionality reduction of fMRI data. We then used sparse ridge regression to identify PDEs from the reduced data, and applied significant PDE features for classification achieving high accuracy in distinguishing individuals with attention deficit hyperactivity disorder (ADHD). This study demonstrates a novel approach for extracting meaningful features from fMRI data for neurological disorder analysis to understand the role of oxygen transport (delivery & consumption) in the brain during neural activity, which is relevant for studying intracranial pathologies.

Brain InformaticsVol. 12(1)
University of Calgary (CA), Alberta Children's Hospital (CA), Université Bourgogne Franche-Comté (FR), MacEwan University (CA)
MacEwan University, Natural Sciences and Engineering Research Council of Canada
Openalex Percentile: Top 60%
Functional Brain Connectivity Studies
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