Enhancing the Interpretability of Asymmetric Catalysis CoMFA through PLS ( <i>n</i> = 1) with Contribution Map Merging and Spatial Aggregation

Although CoMFA/PLS is a powerful QSAR tool, its interpretation can be complicated by multicollinearity. To enhance its interpretability in asymmetric catalysis, we developed a highly predictive model for enantioselectivity in Pd-catalyzed asymmetric fluorination. This was achieved stably by integrating single-latent-variable PLS (<i>n</i> = 1) models with contribution map merging and spatial aggregation. Overlap analysis between the aggregated patterns and molecular structures revealed a strong correlation (Pearson correlation coefficient <i>R</i> ≈ 0.8-0.9) between the sum of the coefficients in the overlap region and the experimental reaction barrier (ΔΔ<i>G</i><sup>‡</sup>). The resulting spatial patterns were also consistent with those of known chemical findings. This methodology enables the extraction of stable, interpretable, and highly predictive spatial contribution patterns. This approach is expected to facilitate rational molecular design by providing reliable mechanistic insights.

Authors

Institutions

Publication Details

Journal
The Journal of Organic Chemistry
Published
2025-12-08
DOI
https://doi.org/10.1021/acs.joc.5c02293
Primary Topic
Machine Learning in Materials Science
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Enhancing the Interpretability of Asymmetric Catalysis CoMFA through PLS ( n = 1) with Contribution Map Merging and Spatial Aggregation

Yuta Sumii, Hiromasa Kaneko
The Journal of Organic Chemistry
Machine Learning in Materials Science
article

Enhancing the Interpretability of Asymmetric Catalysis CoMFA through PLS ( n = 1) with Contribution Map Merging and Spatial Aggregation

Yuta Sumii, Hiromasa Kaneko
article en

Abstract

Although CoMFA/PLS is a powerful QSAR tool, its interpretation can be complicated by multicollinearity. To enhance its interpretability in asymmetric catalysis, we developed a highly predictive model for enantioselectivity in Pd-catalyzed asymmetric fluorination. This was achieved stably by integrating single-latent-variable PLS (<i>n</i> = 1) models with contribution map merging and spatial aggregation. Overlap analysis between the aggregated patterns and molecular structures revealed a strong correlation (Pearson correlation coefficient <i>R</i> ≈ 0.8-0.9) between the sum of the coefficients in the overlap region and the experimental reaction barrier (ΔΔ<i>G</i><sup>‡</sup>). The resulting spatial patterns were also consistent with those of known chemical findings. This methodology enables the extraction of stable, interpretable, and highly predictive spatial contribution patterns. This approach is expected to facilitate rational molecular design by providing reliable mechanistic insights.

The Journal of Organic ChemistryVol. 91(7)
Astellas Pharma (Japan) (JP), Meiji University (JP)
Openalex Percentile: Top 68%
Machine Learning in Materials Science
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

Enhancing the Interpretability of Asymmetric Catalysis CoMFA through PLS ( <i>n</i> = 1) with Contribution Map Merging and Spatial Aggregation — Yuta Sumii, Hiromasa Kaneko · The Journal of Organic Chemistry (2025) | TGRS Research Map | TGRS