Complete genome sequence of Heyndrickxia oleronia EISK28 isolated from human facial skin

H. oleronia EISK28 was isolated from human facial skin and sequenced using Oxford Nanopore long-read technology. De novo assembly resulted in a single complete circular chromosome of 5,118,808 bp with 164× coverage depth. Structural annotation identified 5,143 genes comprising 4,958 CDSs, 36 rRNAs, 144 tRNAs, 5 non-coding RNAs, and 65 pseudo genes. Functional annotation assigned the predicted CDSs to 22 of 25 COG categories and identified 93 carbohydrate-active enzymes. Secondary metabolite analysis revealed three biosynthetic gene clusters, and genome-based antibiotic resistance profiling predicted 11 resistance genes, while phenotypic testing confirmed resistance to ampicillin and penicillin. Mobile genetic element screening detected 34 insertion sequences, 2 prophages, and 16 genomic islands but no association with antibiotic resistance genes.

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Publication Details

Journal
BMC Genomic Data
Published
2025-12-08
DOI
https://doi.org/10.1186/s12863-025-01388-1
Primary Topic
Microbial Natural Products and Biosynthesis
Type
article
Field-Weighted Citation Impact
0.00
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article

Complete genome sequence of Heyndrickxia oleronia EISK28 isolated from human facial skin

Jae‐Ho Shin, Jin Mo Kim, Da-Ryung Jung, Ji Hoon Ha et al.
BMC Genomic Data
Microbial Natural Products and Biosynthesis
article

Complete genome sequence of Heyndrickxia oleronia EISK28 isolated from human facial skin

Jae‐Ho Shin, Jin Mo Kim, Da-Ryung Jung, Ji Hoon Ha, YeonGyun Jung, Yoon Soo Cho, Ikwhan Kim, Jin Young Kim, Eun Kyung Lee
article en

Abstract

H. oleronia EISK28 was isolated from human facial skin and sequenced using Oxford Nanopore long-read technology. De novo assembly resulted in a single complete circular chromosome of 5,118,808 bp with 164× coverage depth. Structural annotation identified 5,143 genes comprising 4,958 CDSs, 36 rRNAs, 144 tRNAs, 5 non-coding RNAs, and 65 pseudo genes. Functional annotation assigned the predicted CDSs to 22 of 25 COG categories and identified 93 carbohydrate-active enzymes. Secondary metabolite analysis revealed three biosynthetic gene clusters, and genome-based antibiotic resistance profiling predicted 11 resistance genes, while phenotypic testing confirmed resistance to ampicillin and penicillin. Mobile genetic element screening detected 34 insertion sequences, 2 prophages, and 16 genomic islands but no association with antibiotic resistance genes.

BMC Genomic DataVol. 27(1)
Hallym University (KR), Kyungpook National University (KR), Kolmar Korea (South Korea) (KR), Hallym University Hangang Sacred Heart Hospital (KR)
Openalex Percentile: Top 58%
Microbial Natural Products and Biosynthesis
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Complete genome sequence of Heyndrickxia oleronia EISK28 isolated from human facial skin — Jae‐Ho Shin, Jin Mo Kim, et al. · BMC Genomic Data (2025) | TGRS Research Map | TGRS