Genomic Characterization of NDM-1 Producer Providencia stuartii Isolated in Russia
<b>Background/Objectives:</b><i>Providencia stuartii</i> is intrinsically resistant to several antibiotic classes, and acquisition of <i>bla</i><sub>NDM</sub> further restricts treatment options. This study aimed to characterize NDM-producing <i>P. stuartii</i> isolates from a small hospital cluster in Russia and to place them within the global genomic context. <b>Methods:</b> Four isolates recovered between June and July 2023 from a single hospital were analyzed using Illumina and Oxford Nanopore sequencing to assess genetic relatedness and plasmid content. <b>Results:</b> The isolates showed identical extensively drug-resistant profiles and were closely related genomically. All carried nearly identical IncC plasmids harboring multiple antimicrobial resistance genes, including <i>bla</i><sub>NDM</sub>. Comparative analysis indicated that these genomes clustered with recent European isolates but differed in the <i>bla</i><sub>NDM</sub> allele and its genomic location. Highly similar IncC plasmids were also found in our previous <i>Klebsiella pneumoniae</i> dataset, demonstrating that this plasmid backbone occurs in multiple bacterial species in the region. <b>Conclusions:</b> The study highlights the role of IncC plasmids in carbapenemase dissemination and underscores the value of genomic surveillance integrating chromosomal and plasmid analyses to track extensively drug-resistant pathogens.
Authors
- German Alexandrovich Shipulin (ORCID: https://orcid.org/0000-0002-3668-6601)
- V. A. Ageevets (ORCID: https://orcid.org/0000-0002-3963-0144)
- Alisa A. Avdeeva (ORCID: https://orcid.org/0000-0003-3637-3119)
- Yuliya A. Savochkina (ORCID: https://orcid.org/0000-0003-2313-0521)
- V. V. Shapovalova (ORCID: https://orcid.org/0000-0002-6915-031X)
- I. V. Ageevets (ORCID: https://orcid.org/0000-0002-3549-3525)
- Alina D. Matsvay (ORCID: https://orcid.org/0000-0002-6301-9169)
- Sidorenko Sv (ORCID: https://orcid.org/0000-0003-3550-7875)
- Ofeliia S. Sulian
- Ekaterina N. Belyakova (ORCID: https://orcid.org/0000-0003-0210-1668)
Institutions
- Children's Scientific and Clinical Center for Infectious Diseases of the Federal Medical and Biological Agency (RU)
- North-Western State Medical University named after I.I. Mechnikov (RU)
- Federal Medical-Biological Agency (RU)
Publication Details
- Journal
- Antibiotics
- Published
- 2025-12-08
- DOI
- https://doi.org/10.3390/antibiotics14121238
- Primary Topic
- Antibiotic Resistance in Bacteria
- Type
- article
- Field-Weighted Citation Impact
- 0.00