Genomic Characterization of NDM-1 Producer Providencia stuartii Isolated in Russia

<b>Background/Objectives:</b><i>Providencia stuartii</i> is intrinsically resistant to several antibiotic classes, and acquisition of <i>bla</i><sub>NDM</sub> further restricts treatment options. This study aimed to characterize NDM-producing <i>P. stuartii</i> isolates from a small hospital cluster in Russia and to place them within the global genomic context. <b>Methods:</b> Four isolates recovered between June and July 2023 from a single hospital were analyzed using Illumina and Oxford Nanopore sequencing to assess genetic relatedness and plasmid content. <b>Results:</b> The isolates showed identical extensively drug-resistant profiles and were closely related genomically. All carried nearly identical IncC plasmids harboring multiple antimicrobial resistance genes, including <i>bla</i><sub>NDM</sub>. Comparative analysis indicated that these genomes clustered with recent European isolates but differed in the <i>bla</i><sub>NDM</sub> allele and its genomic location. Highly similar IncC plasmids were also found in our previous <i>Klebsiella pneumoniae</i> dataset, demonstrating that this plasmid backbone occurs in multiple bacterial species in the region. <b>Conclusions:</b> The study highlights the role of IncC plasmids in carbapenemase dissemination and underscores the value of genomic surveillance integrating chromosomal and plasmid analyses to track extensively drug-resistant pathogens.

Authors

Institutions

Publication Details

Journal
Antibiotics
Published
2025-12-08
DOI
https://doi.org/10.3390/antibiotics14121238
Primary Topic
Antibiotic Resistance in Bacteria
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Genomic Characterization of NDM-1 Producer Providencia stuartii Isolated in Russia

German Alexandrovich Shipulin, V. A. Ageevets, Alisa A. Avdeeva, Yuliya A. Savochkina et al.
Antibiotics
Antibiotic Resistance in Bacteria
article

Genomic Characterization of NDM-1 Producer Providencia stuartii Isolated in Russia

German Alexandrovich Shipulin, V. A. Ageevets, Alisa A. Avdeeva, Yuliya A. Savochkina, V. V. Shapovalova, I. V. Ageevets, Alina D. Matsvay, Sidorenko Sv, Ofeliia S. Sulian, Ekaterina N. Belyakova
article en

Abstract

<b>Background/Objectives:</b><i>Providencia stuartii</i> is intrinsically resistant to several antibiotic classes, and acquisition of <i>bla</i><sub>NDM</sub> further restricts treatment options. This study aimed to characterize NDM-producing <i>P. stuartii</i> isolates from a small hospital cluster in Russia and to place them within the global genomic context. <b>Methods:</b> Four isolates recovered between June and July 2023 from a single hospital were analyzed using Illumina and Oxford Nanopore sequencing to assess genetic relatedness and plasmid content. <b>Results:</b> The isolates showed identical extensively drug-resistant profiles and were closely related genomically. All carried nearly identical IncC plasmids harboring multiple antimicrobial resistance genes, including <i>bla</i><sub>NDM</sub>. Comparative analysis indicated that these genomes clustered with recent European isolates but differed in the <i>bla</i><sub>NDM</sub> allele and its genomic location. Highly similar IncC plasmids were also found in our previous <i>Klebsiella pneumoniae</i> dataset, demonstrating that this plasmid backbone occurs in multiple bacterial species in the region. <b>Conclusions:</b> The study highlights the role of IncC plasmids in carbapenemase dissemination and underscores the value of genomic surveillance integrating chromosomal and plasmid analyses to track extensively drug-resistant pathogens.

AntibioticsVol. 14(12)
Children's Scientific and Clinical Center for Infectious Diseases of the Federal Medical and Biological Agency (RU), North-Western State Medical University named after I.I. Mechnikov (RU), Federal Medical-Biological Agency (RU)
Openalex Percentile: Top 66%
Antibiotic Resistance in Bacteria
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.