scSemiPLC: a semi-supervised learning framework for annotating single-cell RNA-Seq data by generating pseudo-labels through clustering
This work proposes a novel cell annotation training framework, scSemiPLC, which significantly enhances the efficiency and accuracy of annotation by fully leveraging unlabeled data. In the semi-supervised learning component, the framework innovatively generates pseudo-labels through clustering. Subsequently, it evaluates the reliability of these pseudo-labels and assigns corresponding weights, thereby balancing both their quantity and quality. This approach provides new insights into the direction of automatic cell annotation within the realm of semi-supervised learning.
Authors
- Qiuping Ma (ORCID: https://orcid.org/0000-0002-9153-5718)
- Wei Li (ORCID: https://orcid.org/0000-0001-5422-2678)
- Linjie Wang (ORCID: https://orcid.org/0009-0004-2028-7501)
Institutions
- Northeastern University (US)
- Northeastern University (CN)
Publication Details
- Journal
- mSystems
- Published
- 2025-12-08
- DOI
- https://doi.org/10.1128/msystems.00223-25
- Primary Topic
- Single-cell and spatial transcriptomics
- Type
- article
- Field-Weighted Citation Impact
- 0.00