scSemiPLC: a semi-supervised learning framework for annotating single-cell RNA-Seq data by generating pseudo-labels through clustering

This work proposes a novel cell annotation training framework, scSemiPLC, which significantly enhances the efficiency and accuracy of annotation by fully leveraging unlabeled data. In the semi-supervised learning component, the framework innovatively generates pseudo-labels through clustering. Subsequently, it evaluates the reliability of these pseudo-labels and assigns corresponding weights, thereby balancing both their quantity and quality. This approach provides new insights into the direction of automatic cell annotation within the realm of semi-supervised learning.

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Publication Details

Journal
mSystems
Published
2025-12-08
DOI
https://doi.org/10.1128/msystems.00223-25
Primary Topic
Single-cell and spatial transcriptomics
Type
article
Field-Weighted Citation Impact
0.00
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article

scSemiPLC: a semi-supervised learning framework for annotating single-cell RNA-Seq data by generating pseudo-labels through clustering

Qiuping Ma, Wei Li, Linjie Wang
mSystems
Single-cell and spatial transcriptomics
article

scSemiPLC: a semi-supervised learning framework for annotating single-cell RNA-Seq data by generating pseudo-labels through clustering

Qiuping Ma, Wei Li, Linjie Wang
article en

Abstract

This work proposes a novel cell annotation training framework, scSemiPLC, which significantly enhances the efficiency and accuracy of annotation by fully leveraging unlabeled data. In the semi-supervised learning component, the framework innovatively generates pseudo-labels through clustering. Subsequently, it evaluates the reliability of these pseudo-labels and assigns corresponding weights, thereby balancing both their quantity and quality. This approach provides new insights into the direction of automatic cell annotation within the realm of semi-supervised learning.

mSystemsVol. 11(1)
Northeastern University (US), Northeastern University (CN)
Openalex Percentile: Top 65%
Single-cell and spatial transcriptomics
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