Convergent evolution on <i>RBA1</i> regulates <i>Candidozyma auris</i> host adaptation

<i>Candidozyma auris</i> is an emerging healthcare-associated fungal pathogen, increasingly isolated from clinical outbreaks, with a high propensity to colonize patients and the medical environment. Here, we leveraged <i>C. auris</i> isolates from multi-facility clinical outbreaks to identify genomic patho-adaptations promoting persistence and dissemination in the healthcare environment. Genomic and phylogenetic analyses revealed loss-of-function mutations in the uncharacterized <i>C. auris</i> transcription factor gene <i>RBA1</i> to have independently emerged multiple times within these outbreaks. We demonstrate loss of <i>RBA1</i> increases <i>C. auris</i> adhesion to plastic and human keratinocytes, enhances biofilm formation, and exacerbates fungal burden in a mouse model of catheter-associated urinary tract infection. Finally, we uncover mutations in <i>RBA1</i> have emerged during multiple <i>C. auris</i> outbreaks across the globe, and that <i>RBA1</i> mutant lineages are present among large ongoing clinical outbreaks. These results reveal loss-of-function mutations in <i>C. auris RBA1</i> as a novel and clinically relevant genetic determinant of enhanced outbreak characteristics.

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Publication Details

Journal
bioRxiv (Cold Spring Harbor Laboratory)
Published
2025-12-04
DOI
https://doi.org/10.64898/2025.12.04.692421
Primary Topic
Antifungal resistance and susceptibility
Type
article
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article

Convergent evolution on RBA1 regulates Candidozyma auris host adaptation

Wadha Ahmed Alfouzan, Sarah Jones, Laura A. Doorley, Alyssa Ann La Bella et al.
bioRxiv (Cold Spring Harbor Laboratory)
Antifungal resistance and susceptibility
article

Convergent evolution on RBA1 regulates Candidozyma auris host adaptation

Wadha Ahmed Alfouzan, Sarah Jones, Laura A. Doorley, Alyssa Ann La Bella, Mohammad Asadzadeh, Suhail Ahmad, Jeffrey M. Rybak, Eiman Mokaddas, Teresa R. O’Meara, Guolei Zhao, Ana L. Flores‐Mireles, Khalifa Al-Banwan, Inaam Al‐Obaid, Felipe H. Santiago Tirado, Quanita J. Choudhury
article en

Abstract

<i>Candidozyma auris</i> is an emerging healthcare-associated fungal pathogen, increasingly isolated from clinical outbreaks, with a high propensity to colonize patients and the medical environment. Here, we leveraged <i>C. auris</i> isolates from multi-facility clinical outbreaks to identify genomic patho-adaptations promoting persistence and dissemination in the healthcare environment. Genomic and phylogenetic analyses revealed loss-of-function mutations in the uncharacterized <i>C. auris</i> transcription factor gene <i>RBA1</i> to have independently emerged multiple times within these outbreaks. We demonstrate loss of <i>RBA1</i> increases <i>C. auris</i> adhesion to plastic and human keratinocytes, enhances biofilm formation, and exacerbates fungal burden in a mouse model of catheter-associated urinary tract infection. Finally, we uncover mutations in <i>RBA1</i> have emerged during multiple <i>C. auris</i> outbreaks across the globe, and that <i>RBA1</i> mutant lineages are present among large ongoing clinical outbreaks. These results reveal loss-of-function mutations in <i>C. auris RBA1</i> as a novel and clinically relevant genetic determinant of enhanced outbreak characteristics.

bioRxiv (Cold Spring Harbor Laboratory)
University of Notre Dame (US), St. Jude Children's Research Hospital (US), University of Michigan (US), Farwaniya Hospital (KW), Amiri Hospital (KW), Kuwait University (KW), Al-Sabah Hospital (KW), Ibn Sina Hospital (KW)
Openalex Percentile: Top 55%
Antifungal resistance and susceptibility
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