Convergent evolution on <i>RBA1</i> regulates <i>Candidozyma auris</i> host adaptation
<i>Candidozyma auris</i> is an emerging healthcare-associated fungal pathogen, increasingly isolated from clinical outbreaks, with a high propensity to colonize patients and the medical environment. Here, we leveraged <i>C. auris</i> isolates from multi-facility clinical outbreaks to identify genomic patho-adaptations promoting persistence and dissemination in the healthcare environment. Genomic and phylogenetic analyses revealed loss-of-function mutations in the uncharacterized <i>C. auris</i> transcription factor gene <i>RBA1</i> to have independently emerged multiple times within these outbreaks. We demonstrate loss of <i>RBA1</i> increases <i>C. auris</i> adhesion to plastic and human keratinocytes, enhances biofilm formation, and exacerbates fungal burden in a mouse model of catheter-associated urinary tract infection. Finally, we uncover mutations in <i>RBA1</i> have emerged during multiple <i>C. auris</i> outbreaks across the globe, and that <i>RBA1</i> mutant lineages are present among large ongoing clinical outbreaks. These results reveal loss-of-function mutations in <i>C. auris RBA1</i> as a novel and clinically relevant genetic determinant of enhanced outbreak characteristics.
Authors
- Wadha Ahmed Alfouzan (ORCID: https://orcid.org/0000-0002-4501-5316)
- Sarah Jones (ORCID: https://orcid.org/0000-0003-0081-5333)
- Laura A. Doorley (ORCID: https://orcid.org/0000-0002-1695-9561)
- Alyssa Ann La Bella (ORCID: https://orcid.org/0000-0001-7396-9670)
- Mohammad Asadzadeh (ORCID: https://orcid.org/0000-0002-9151-1505)
- Suhail Ahmad (ORCID: https://orcid.org/0000-0003-3492-4781)
- Jeffrey M. Rybak (ORCID: https://orcid.org/0000-0002-9317-0935)
- Eiman Mokaddas (ORCID: https://orcid.org/0000-0001-5673-1476)
- Teresa R. O’Meara (ORCID: https://orcid.org/0000-0002-8901-0154)
- Guolei Zhao (ORCID: https://orcid.org/0000-0001-9605-0704)
- Ana L. Flores‐Mireles (ORCID: https://orcid.org/0000-0003-4610-4246)
- Khalifa Al-Banwan
- Inaam Al‐Obaid
- Felipe H. Santiago Tirado
- Quanita J. Choudhury
Institutions
- University of Notre Dame (US)
- St. Jude Children's Research Hospital (US)
- University of Michigan (US)
- Farwaniya Hospital (KW)
- Amiri Hospital (KW)
- Kuwait University (KW)
- Al-Sabah Hospital (KW)
- Ibn Sina Hospital (KW)
Publication Details
- Journal
- bioRxiv (Cold Spring Harbor Laboratory)
- Published
- 2025-12-04
- DOI
- https://doi.org/10.64898/2025.12.04.692421
- Primary Topic
- Antifungal resistance and susceptibility
- Type
- article
- Field-Weighted Citation Impact
- 0.00