Structure, Function, and Inhibition of Adenylosuccinate Lyase (ADSL) from <i>Mycobacterium tuberculosis</i>

<i>Adenylosuccinate lyase</i> (ADSL), encoded by the <i>purB</i> gene, is an essential enzyme in the purine biosynthesis pathway of <i>Mycobacterium tuberculosis</i> (<i>Mtb</i>), making it a promising target for antimicrobial drug development. Here, we report the expression, purification, kinetic characterization, high-throughput screening (HTS), and structural analysis of <i>Mtb</i> ADSL. We developed a highly sensitive and scalable bioluminescent assay using a PPDK-luciferase coupling system to quantify ADSL enzymatic activity <i>via</i> AMP detection. This assay enabled reliable kinetic analysis and successful pilot HTS of a small-molecule library, identifying bithionol and tetraiodothyroacetic acid (Tetrac) as inhibitors of <i>Mtb</i> ADSL. Inhibitory activity was confirmed using an orthogonal fluorescence polarization (FP) assay and further validated using the AMP-Glo luminescence assay. Specificity was evaluated using human ADSL (<i>hu</i>ADSL) to confirm that the compounds selectively inhibited <i>Mtb</i> ADSL while sparing the human enzyme. Thermal shift and gel-based protein stability assays demonstrated direct binding of bithionol and Tetrac to <i>Mtb</i> ADSL. Furthermore, bithionol and Tetrac displayed antibacterial activity against <i>M. tuberculosis</i> strains H37Ra and H37Rv, with moderate to low cytotoxicity toward human cells. Supplementation with exogenous AMP restored the growth of <i>M. tuberculosis</i> H37Ra inhibited by bithionol and Tetrac, confirming that both compounds act through on-target engagement of <i>Mtb</i> ADSL. The phagocytosis assay demonstrated that the compounds retained intracellular efficacy against <i>M. tuberculosis</i>. Finally, we determined the crystal structures of <i>Mtb</i> ADSL in two apo forms at high resolution (1.78 Å and 2.1 Å), revealing conserved tetrameric architecture with distinct active-site features that differentiate <i>Mtb</i> from human ADSL. Modeling suggested that both compounds bind to an allosteric site adjacent to the active site. These findings provide a framework for structure-guided development of selective ADSL inhibitors as potential antitubercular agents.

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Publication Details

Journal
ACS Infectious Diseases
Published
2025-12-08
DOI
https://doi.org/10.1021/acsinfecdis.5c00442
Primary Topic
Biochemical and Molecular Research
Type
article
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article

Structure, Function, and Inhibition of Adenylosuccinate Lyase (ADSL) from Mycobacterium tuberculosis

Mingyu Ma, Devi Jaganathan, Ruisheng Xiong, Anil Kumar Ojha et al.
ACS Infectious Diseases
Biochemical and Molecular Research
article

Structure, Function, and Inhibition of Adenylosuccinate Lyase (ADSL) from Mycobacterium tuberculosis

Mingyu Ma, Devi Jaganathan, Ruisheng Xiong, Anil Kumar Ojha, K.P. Battaile, Jamie Corro, Vigyasa Singh, Subodh Kumar Samrat, Ran Zhang, Zhong Li, Ke Chen, Qingyu Zhang, Hongmin Li
article en

Abstract

<i>Adenylosuccinate lyase</i> (ADSL), encoded by the <i>purB</i> gene, is an essential enzyme in the purine biosynthesis pathway of <i>Mycobacterium tuberculosis</i> (<i>Mtb</i>), making it a promising target for antimicrobial drug development. Here, we report the expression, purification, kinetic characterization, high-throughput screening (HTS), and structural analysis of <i>Mtb</i> ADSL. We developed a highly sensitive and scalable bioluminescent assay using a PPDK-luciferase coupling system to quantify ADSL enzymatic activity <i>via</i> AMP detection. This assay enabled reliable kinetic analysis and successful pilot HTS of a small-molecule library, identifying bithionol and tetraiodothyroacetic acid (Tetrac) as inhibitors of <i>Mtb</i> ADSL. Inhibitory activity was confirmed using an orthogonal fluorescence polarization (FP) assay and further validated using the AMP-Glo luminescence assay. Specificity was evaluated using human ADSL (<i>hu</i>ADSL) to confirm that the compounds selectively inhibited <i>Mtb</i> ADSL while sparing the human enzyme. Thermal shift and gel-based protein stability assays demonstrated direct binding of bithionol and Tetrac to <i>Mtb</i> ADSL. Furthermore, bithionol and Tetrac displayed antibacterial activity against <i>M. tuberculosis</i> strains H37Ra and H37Rv, with moderate to low cytotoxicity toward human cells. Supplementation with exogenous AMP restored the growth of <i>M. tuberculosis</i> H37Ra inhibited by bithionol and Tetrac, confirming that both compounds act through on-target engagement of <i>Mtb</i> ADSL. The phagocytosis assay demonstrated that the compounds retained intracellular efficacy against <i>M. tuberculosis</i>. Finally, we determined the crystal structures of <i>Mtb</i> ADSL in two apo forms at high resolution (1.78 Å and 2.1 Å), revealing conserved tetrameric architecture with distinct active-site features that differentiate <i>Mtb</i> from human ADSL. Modeling suggested that both compounds bind to an allosteric site adjacent to the active site. These findings provide a framework for structure-guided development of selective ADSL inhibitors as potential antitubercular agents.

ACS Infectious DiseasesVol. 12(1)
Oklahoma State Department of Health (US), New York State Department of Health (US), Wadsworth Center (US), University of Arizona (US), University at Albany, State University of New York (US), New York Structural Biology Center (US), Department of Physics, Mathematics and Informatics (BY), Cellular Research (United States) (US), Institut de Biologie Moléculaire et Cellulaire (FR), BIO5 Institute
Openalex Percentile: Top 65%
Biochemical and Molecular Research
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