Dual-Path Global Awareness Transformer for Optical Chemical Structure Recognition

Optical chemical structure recognition (OCSR), reconstructing structural information from chemical graphics into machine-readable sequences, has recently emerged as a focal research topic at the intersection of materials science and computer science. Existing multimodal fusion methods possess limited awareness of global context and often produce erroneous sequences when encountering complex motifs, such as rings or long chains. To address this issue, we propose the dual-path global awareness transformer (DGAT) for sequence generation. Its cascaded global feature enhancement (CGFE) module emphasizes global context and bridges cross-modal gaps, while the sparse differential global-local attention (SDGLA) module dynamically captures fine-grained differences between global and local features. We have constructed a new evaluation data set, and DGAT achieves state-of-the-art (SOTA) performance, reaching BLEU-4 = 0.840 (+5.3%), ROUGE-L = 0.908 (+1.9%), and mean Tanimoto similarity = 0.988 (+1.2%) over the best published model, confirming its ability to generate sequences that are both symbolically accurate and chemically precise.

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Publication Details

Journal
The Journal of Physical Chemistry Letters
Published
2025-12-08
DOI
https://doi.org/10.1021/acs.jpclett.5c03057
Primary Topic
Machine Learning in Materials Science
Type
article
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article

Dual-Path Global Awareness Transformer for Optical Chemical Structure Recognition

Shuit‐Tong Lee, Youyong Li, Yujin Ji, Rui Wang
The Journal of Physical Chemistry Letters
Machine Learning in Materials Science
article

Dual-Path Global Awareness Transformer for Optical Chemical Structure Recognition

Shuit‐Tong Lee, Youyong Li, Yujin Ji, Rui Wang
article en

Abstract

Optical chemical structure recognition (OCSR), reconstructing structural information from chemical graphics into machine-readable sequences, has recently emerged as a focal research topic at the intersection of materials science and computer science. Existing multimodal fusion methods possess limited awareness of global context and often produce erroneous sequences when encountering complex motifs, such as rings or long chains. To address this issue, we propose the dual-path global awareness transformer (DGAT) for sequence generation. Its cascaded global feature enhancement (CGFE) module emphasizes global context and bridges cross-modal gaps, while the sparse differential global-local attention (SDGLA) module dynamically captures fine-grained differences between global and local features. We have constructed a new evaluation data set, and DGAT achieves state-of-the-art (SOTA) performance, reaching BLEU-4 = 0.840 (+5.3%), ROUGE-L = 0.908 (+1.9%), and mean Tanimoto similarity = 0.988 (+1.2%) over the best published model, confirming its ability to generate sequences that are both symbolically accurate and chemically precise.

The Journal of Physical Chemistry LettersVol. 16(50)
Macau University of Science and Technology (MO), Soochow University (CN), Institute of Molecular Functional Materials (CN), Macao Polytechnic University (MO)
Openalex Percentile: Top 68%
Machine Learning in Materials Science
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Dual-Path Global Awareness Transformer for Optical Chemical Structure Recognition — Shuit‐Tong Lee, Youyong Li, et al. · The Journal of Physical Chemistry Letters (2025) | TGRS Research Map | TGRS