The first draft genome sequence of Penicillium adametzioides FBCC-F1417, isolated from freshwater plant litter in South Korea

Penicillium adametzioides is a phylogenetically distinct and ecologically adaptable member of the genus Penicillium. Reports from different isolates and contexts describe postharvest pathogenicity, biocontrol potential, and production of marine-derived metabolites. Because these roles come from different strains and environments, species-level generalizations remain uncertain. To address the lack of genomic data while avoiding overgeneralization, we sequenced and annotated P. adametzioides FBCC-F1417, a freshwater plant-litter isolate from Korea, to provide a strain-resolved genomic resource that supports comparative and pangenomic studies across P. adametzioides and related taxa. We assembled the genome of P. adametzioides FBCC-F1417 into 12 contigs totaling 40.47 Mb, with an N50 of 5.16 Mb and GC content of 45.52%. BUSCO analysis showed 99.2% completeness, indicating a high-quality assembly. Gene prediction identified 13,643 protein-coding genes, of which 5,959 proteins (40.7%) were functionally annotated. Repeat analysis showed that 6.62% genome consisted of repetitive elements. Secondary metabolite analysis predicted 86 biosynthetic gene clusters, including NRPS, PKS, terpene, and hybrid types. These features should be interpreted as attributes of FBCC-F1417 rather than definitive species-wide characteristics, and the annotated genome is intended as a reference for downstream comparative and pangenomic analyses that will test which features are conserved across P. adametzioides.

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Journal
BMC Genomic Data
Published
2025-12-08
DOI
https://doi.org/10.1186/s12863-025-01382-7
Primary Topic
Plant-Microbe Interactions and Immunity
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article
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article

The first draft genome sequence of Penicillium adametzioides FBCC-F1417, isolated from freshwater plant litter in South Korea

Jaeduk Goh, Young‐Do Nam, Yoeguang Hue, Ki Tae Kim
BMC Genomic Data
Plant-Microbe Interactions and Immunity
article

The first draft genome sequence of Penicillium adametzioides FBCC-F1417, isolated from freshwater plant litter in South Korea

Jaeduk Goh, Young‐Do Nam, Yoeguang Hue, Ki Tae Kim
article en

Abstract

Penicillium adametzioides is a phylogenetically distinct and ecologically adaptable member of the genus Penicillium. Reports from different isolates and contexts describe postharvest pathogenicity, biocontrol potential, and production of marine-derived metabolites. Because these roles come from different strains and environments, species-level generalizations remain uncertain. To address the lack of genomic data while avoiding overgeneralization, we sequenced and annotated P. adametzioides FBCC-F1417, a freshwater plant-litter isolate from Korea, to provide a strain-resolved genomic resource that supports comparative and pangenomic studies across P. adametzioides and related taxa. We assembled the genome of P. adametzioides FBCC-F1417 into 12 contigs totaling 40.47 Mb, with an N50 of 5.16 Mb and GC content of 45.52%. BUSCO analysis showed 99.2% completeness, indicating a high-quality assembly. Gene prediction identified 13,643 protein-coding genes, of which 5,959 proteins (40.7%) were functionally annotated. Repeat analysis showed that 6.62% genome consisted of repetitive elements. Secondary metabolite analysis predicted 86 biosynthetic gene clusters, including NRPS, PKS, terpene, and hybrid types. These features should be interpreted as attributes of FBCC-F1417 rather than definitive species-wide characteristics, and the annotated genome is intended as a reference for downstream comparative and pangenomic analyses that will test which features are conserved across P. adametzioides.

BMC Genomic DataVol. 26(1)
Sunchon National University (KR), National Institute of Biological Resources (KR)
Ministry of Environment, Ministry of Education, India, Korea Environmental Industry and Technology Institute, National Institute of Biological Resources
Openalex Percentile: Top 72%
Plant-Microbe Interactions and Immunity
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