Protein embeddings and local alignments

The new, Ankh-score-based, program is clearly superior to all existing methods. New light shed on the protein embeddings can guide future improvements. In order to facilitate the use of the new method and protocol, they are freely available as a web server at e-score.csd.uwo.ca and as source code at github.com/lucian-ilie/E-score.

Authors

Institutions

Publication Details

Journal
Computational and Structural Biotechnology Journal
Published
2025-12-08
DOI
https://doi.org/10.1016/j.csbj.2025.12.002
Citations
1
Primary Topic
Protein Structure and Dynamics
Type
article
Field-Weighted Citation Impact
0.81
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Protein embeddings and local alignments

G. Brian Golding, Lucian Ilie, J Malec
1 citations
Computational and Structural Biotechnology Journal
Protein Structure and Dynamics
0.81
article

Protein embeddings and local alignments

G. Brian Golding, Lucian Ilie, J Malec
article en
1 citations

Abstract

The new, Ankh-score-based, program is clearly superior to all existing methods. New light shed on the protein embeddings can guide future improvements. In order to facilitate the use of the new method and protocol, they are freely available as a web server at e-score.csd.uwo.ca and as source code at github.com/lucian-ilie/E-score.

Computational and Structural Biotechnology JournalVol. 31
Western University (CA), McMaster University (CA)
Openalex Percentile: Top 21%
Protein Structure and Dynamics
0.81
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.