Utilizing probability estimates from machine learning and pollen to understand the depositional influences on branched GDGT in wetlands, peatlands, and lakes

Abstract. Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are critical molecular biomarkers for the quantitative reconstruction of past environments, ambient temperature, and pH across various archives. However, numerous issues persist that limit their application. The distribution of brGDGTs varies significantly based on provenance, resulting in biases in environmental reconstructions that rely on fractional abundances and derived indices, such as MBT5ME′. This issue is especially significant in shallow lakes, wetlands, and peatlands, where ecosystems are sensitive to diverse environmental and climatic factors. Recent advancements, such as machine learning techniques, have been developed to identify changes in provenance; however, these techniques are insufficient for detecting mixed environments. The probability estimates derived from five machine learning algorithms are employed here to detect provenance changes in brGDGT downcore records and to identify periods of mixed provenance. A new global modern database (n=2031) was compiled to train, validate, test, and apply these algorithms to two sedimentary records. Our findings are corroborated by pollen, non-pollen palynomorphs, and X-ray fluorescence (XRF) obtained from the same sedimentary core sequence. These microfossil and geochemical proxies are utilized to discuss changes in provenance, hydrology, and ecology that influence brGDGT provenance. Probability estimates derived from random forest with a sigmoid calibration are most effective in detecting changes in brGDGT provenance. Minor changes in the relative contributions of brGDGT provenance can significantly influence the distribution of brGDGT, especially regarding the MBT5ME′ index.

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Publication Details

Journal
Biogeosciences
Published
2025-12-08
DOI
https://doi.org/10.5194/bg-22-7687-2025
Citations
1
Primary Topic
Geology and Paleoclimatology Research
Type
article
Field-Weighted Citation Impact
1.30

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article

Utilizing probability estimates from machine learning and pollen to understand the depositional influences on branched GDGT in wetlands, peatlands, and lakes

Claude Colombié, Jon Camuera, Mary Robles, Guillemette Ménot et al.
1 citations
Biogeosciences
Geology and Paleoclimatology Research
1.30
article

Utilizing probability estimates from machine learning and pollen to understand the depositional influences on branched GDGT in wetlands, peatlands, and lakes

Claude Colombié, Jon Camuera, Mary Robles, Guillemette Ménot, Cindy De Jonge, Gonzalo Jiménez‐Moreno, Marta Rodrigo‐Gámiz, Odile Peyron, Lucas Dugerdil, Sébastien Joannin, María J. Ramos‐Román, Amy Cromartie, Lilit Sahakyan
article en
1 citations

Abstract

Abstract. Branched glycerol dialkyl glycerol tetraethers (brGDGTs) are critical molecular biomarkers for the quantitative reconstruction of past environments, ambient temperature, and pH across various archives. However, numerous issues persist that limit their application. The distribution of brGDGTs varies significantly based on provenance, resulting in biases in environmental reconstructions that rely on fractional abundances and derived indices, such as MBT5ME′. This issue is especially significant in shallow lakes, wetlands, and peatlands, where ecosystems are sensitive to diverse environmental and climatic factors. Recent advancements, such as machine learning techniques, have been developed to identify changes in provenance; however, these techniques are insufficient for detecting mixed environments. The probability estimates derived from five machine learning algorithms are employed here to detect provenance changes in brGDGT downcore records and to identify periods of mixed provenance. A new global modern database (n=2031) was compiled to train, validate, test, and apply these algorithms to two sedimentary records. Our findings are corroborated by pollen, non-pollen palynomorphs, and X-ray fluorescence (XRF) obtained from the same sedimentary core sequence. These microfossil and geochemical proxies are utilized to discuss changes in provenance, hydrology, and ecology that influence brGDGT provenance. Probability estimates derived from random forest with a sigmoid calibration are most effective in detecting changes in brGDGT provenance. Minor changes in the relative contributions of brGDGT provenance can significantly influence the distribution of brGDGT, especially regarding the MBT5ME′ index.

BiogeosciencesVol. 22(23)
Université Claude Bernard Lyon 1 (FR), École Normale Supérieure de Lyon (FR), Universidad Complutense de Madrid (ES), Centre National de la Recherche Scientifique (FR), Universidad de Granada (ES), Universidad Rey Juan Carlos (ES), Université de Montpellier (FR), ETH Zurich (CH), Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement (FR), Centre de Recherche et d’Enseignement de Géosciences de l’Environnement (FR), Institut des Sciences de l'Evolution de Montpellier (FR), Cultures et Environnements. Préhistoire, Antiquité, Moyen Âge (FR), Institut de Recherche pour le Développement (FR), École d'Ingénieurs en Chimie et Sciences du Numérique (FR), National Academy of Sciences of Armenia (AM)
National Science Foundation, Agence Nationale de la Recherche, Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung, Université de Montpellier
Openalex Percentile: Top 16%
Geology and Paleoclimatology Research
1.30
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