Integration of multiple metabolic pathways supports high rates of carbon precipitation in living microbialites

Microbialites are lithifying microbial mats that form multi-layered structures via biological carbon (C) uptake and carbonate precipitation. Here we relate C uptake and precipitation rates to taxonomic diversity and functional capacity of bacterial communities in supratidal freshwater microbialites. Diel assays and analysis of functional gene capacity reveal that photosynthesis is bolstered by light-independent, biological C uptake mechanisms, including biomineralization and chemoautotrophy. Through integration of these mechanisms, microbialites can capture inorganic C over a 24-hour cycle at a rate of 7-12 g C m<sup>-2</sup> 24 h<sup>-1</sup>. Notably, up to 87 % of the C taken up is precipitated as inorganic carbon, capturing 2.4 - 4.3 kg C m<sup>-2</sup> year<sup>-1</sup>. Based on observed porosity and laboratory-based accretion rates, this equates to 13-23 mm of vertical calcium carbonate accumulation per year. Hence, contemporary microbialites provide a highly effective biological mechanism to precipitate dissolved CO<sub>2</sub> as geologically stable carbonate mineral deposits.

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Journal
Nature Communications
Published
2025-12-08
DOI
https://doi.org/10.1038/s41467-025-66552-8
Primary Topic
Microbial Applications in Construction Materials
Type
article
Field-Weighted Citation Impact
0.00

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article

Integration of multiple metabolic pathways supports high rates of carbon precipitation in living microbialites

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Microbial Applications in Construction Materials
article

Integration of multiple metabolic pathways supports high rates of carbon precipitation in living microbialites

Rachel E. Sipler, Samantha C. Waterworth, Ross‐Lynne A. Gibb, Steffen H. Büttner, Thomas G. Bornman, Rosemary A. Dorrington, Eric W. Isemonger, Xavier Siwe‐Noundou, Siddarthan Venkatachalam
article en

Abstract

Microbialites are lithifying microbial mats that form multi-layered structures via biological carbon (C) uptake and carbonate precipitation. Here we relate C uptake and precipitation rates to taxonomic diversity and functional capacity of bacterial communities in supratidal freshwater microbialites. Diel assays and analysis of functional gene capacity reveal that photosynthesis is bolstered by light-independent, biological C uptake mechanisms, including biomineralization and chemoautotrophy. Through integration of these mechanisms, microbialites can capture inorganic C over a 24-hour cycle at a rate of 7-12 g C m<sup>-2</sup> 24 h<sup>-1</sup>. Notably, up to 87 % of the C taken up is precipitated as inorganic carbon, capturing 2.4 - 4.3 kg C m<sup>-2</sup> year<sup>-1</sup>. Based on observed porosity and laboratory-based accretion rates, this equates to 13-23 mm of vertical calcium carbonate accumulation per year. Hence, contemporary microbialites provide a highly effective biological mechanism to precipitate dissolved CO<sub>2</sub> as geologically stable carbonate mineral deposits.

Nature CommunicationsVol. 17(1)
Memorial University of Newfoundland (CA), University of Wisconsin–Madison (US), Rhodes University (ZA), Bigelow Laboratory for Ocean Sciences (US), Sefako Makgatho Health Sciences University (ZA), Ministry of Earth Sciences (IN), National Cancer Institute (US), South African Environmental Observation Network (ZA), South African Institute for Aquatic Biodiversity (ZA), Nelson Mandela University (ZA)
National Research Foundation
Openalex Percentile: Top 63%
Microbial Applications in Construction Materials
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