Clinically aligned multi-modal image-text model for pan-cancer prognosis prediction

Cancer prognosis prediction increasingly leverages multi-modal learning, yet existing approaches often rely on omics data that are costly and difficult to collect in routine practice. Pathology reports, by contrast, are routinely generated and widely available, providing a practical textual modality complementary to histology. We present CALM (Clinical Anchor text guided Learning for Multi-modal prognosis prediction), a general framework that integrates pathology images and reports through risk-specific anchor texts. CALM systematically incorporates prior clinical knowledge by guiding image and text alignment with large language model–derived anchors, further refined via few-shot tuning. Across 14 TCGA cancer types, CALM improved prognostic accuracy compared to image and text baselines (up to +11.5% mean C-index), with enhanced training stability. CALM achieved performance comparable to image–omics integration in PORPOISE (0.652 vs. 0.644), highlighting the prognostic value of text. External validation in an independent head and neck cancer cohort demonstrated that CALM improved generalization in zero-shot settings. Attention-based interpretation further confirmed that CALM aligns diagnostic text with tumor regions. Together, CALM offers a simple, interpretable, and clinically viable strategy for prognosis prediction, expanding the role of routine pathology reports as scalable priors in multi-modal oncology AI.

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Publication Details

Journal
BioData Mining
Published
2025-12-06
DOI
https://doi.org/10.1186/s13040-025-00495-0
Primary Topic
AI in cancer detection
Type
article
Field-Weighted Citation Impact
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article

Clinically aligned multi-modal image-text model for pan-cancer prognosis prediction

Hyun Jee Lee, Jaesik Kim, Yidi Huang, Jacob S. Leiby et al.
BioData Mining
AI in cancer detection
article

Clinically aligned multi-modal image-text model for pan-cancer prognosis prediction

Hyun Jee Lee, Jaesik Kim, Yidi Huang, Jacob S. Leiby, Derek A. Oldridge, Byonghan Lee, Michael R. F. Lee, Dokyoon Kim, Myung‐Giun Noh, Jong‐Hyun Lee, Young Chan Lee, Lina Takemaru, Young-Gyu Eun
article en

Abstract

Cancer prognosis prediction increasingly leverages multi-modal learning, yet existing approaches often rely on omics data that are costly and difficult to collect in routine practice. Pathology reports, by contrast, are routinely generated and widely available, providing a practical textual modality complementary to histology. We present CALM (Clinical Anchor text guided Learning for Multi-modal prognosis prediction), a general framework that integrates pathology images and reports through risk-specific anchor texts. CALM systematically incorporates prior clinical knowledge by guiding image and text alignment with large language model–derived anchors, further refined via few-shot tuning. Across 14 TCGA cancer types, CALM improved prognostic accuracy compared to image and text baselines (up to +11.5% mean C-index), with enhanced training stability. CALM achieved performance comparable to image–omics integration in PORPOISE (0.652 vs. 0.644), highlighting the prognostic value of text. External validation in an independent head and neck cancer cohort demonstrated that CALM improved generalization in zero-shot settings. Attention-based interpretation further confirmed that CALM aligns diagnostic text with tumor regions. Together, CALM offers a simple, interpretable, and clinically viable strategy for prognosis prediction, expanding the role of routine pathology reports as scalable priors in multi-modal oncology AI.

BioData MiningVol. 19(1)
Kyung Hee University Medical Center (KR), Kyung Hee University Hospital at Gangdong (KR), Ajou University (KR), University of Pennsylvania (US)
Openalex Percentile: Top 79%
AI in cancer detection
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