Mitochondrial genome characterization and phylogeny of <i>Hynobius notialis</i> , a Korean endemic salamander

<i>Hynobius notialis</i> is a recently described salamander species endemic to the southern Korean Peninsula, with a restricted distribution and vulnerable conservation status. Despite its evolutionary and conservation significance, the complete mitochondrial genome of this species has not yet been characterized. In this study, we sequenced and analyzed the entire mitogenome of <i>H. notialis</i> (16,408 bp), comprising 13 protein-coding genes, 22 tRNAs, two rRNAs, and a single control region. Most genes are encoded on the heavy (H) strand, whereas ND6 and several tRNAs are located on the light (L) strand, consistent with the typical organization observed in other vertebrates. Comparative analyses revealed that the nucleotide composition of <i>H. notialis</i> is highly conserved relative to other <i>Hynobius</i> species and <i>Onychodacytuls fischeri</i>, reflecting family-level evolutionary constraints on mitochondrial genome evolution. Phylogenetic reconstruction using complete mitogenomes showed that <i>H. notialis</i> is most closely related to <i>H. unisacculus,</i> forming a monophyletic clade with <i>H. unisacculus</i> and <i>H. quelpaertensis</i>, which together with <i>H. yangi</i> and <i>H. leechii</i> constitute a broader monophyletic group of Korean <i>Hynobius</i> species. These results not only clarify the phylogenetic position of <i>H. notialis</i> but also provide a valuable molecular resource for future studies on evolutionary history, biogeography, and conservation of Korean endemic salamanders.

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Journal
Mitochondrial DNA Part B
Published
2025-12-02
DOI
https://doi.org/10.1080/23802359.2025.2597137
Primary Topic
Genomics and Phylogenetic Studies
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article
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article

Mitochondrial genome characterization and phylogeny of Hynobius notialis , a Korean endemic salamander

Junghwa An, Ho Young Suk, MI‐SOOK MIN, Daecheol Jeong et al.
Mitochondrial DNA Part B
Genomics and Phylogenetic Studies
article

Mitochondrial genome characterization and phylogeny of Hynobius notialis , a Korean endemic salamander

Junghwa An, Ho Young Suk, MI‐SOOK MIN, Daecheol Jeong, S Park
article en

Abstract

<i>Hynobius notialis</i> is a recently described salamander species endemic to the southern Korean Peninsula, with a restricted distribution and vulnerable conservation status. Despite its evolutionary and conservation significance, the complete mitochondrial genome of this species has not yet been characterized. In this study, we sequenced and analyzed the entire mitogenome of <i>H. notialis</i> (16,408 bp), comprising 13 protein-coding genes, 22 tRNAs, two rRNAs, and a single control region. Most genes are encoded on the heavy (H) strand, whereas ND6 and several tRNAs are located on the light (L) strand, consistent with the typical organization observed in other vertebrates. Comparative analyses revealed that the nucleotide composition of <i>H. notialis</i> is highly conserved relative to other <i>Hynobius</i> species and <i>Onychodacytuls fischeri</i>, reflecting family-level evolutionary constraints on mitochondrial genome evolution. Phylogenetic reconstruction using complete mitogenomes showed that <i>H. notialis</i> is most closely related to <i>H. unisacculus,</i> forming a monophyletic clade with <i>H. unisacculus</i> and <i>H. quelpaertensis</i>, which together with <i>H. yangi</i> and <i>H. leechii</i> constitute a broader monophyletic group of Korean <i>Hynobius</i> species. These results not only clarify the phylogenetic position of <i>H. notialis</i> but also provide a valuable molecular resource for future studies on evolutionary history, biogeography, and conservation of Korean endemic salamanders.

Mitochondrial DNA Part BVol. 11(1)
Seoul National University (KR), New Generation University College (ET), National Institute of Biological Resources (KR), Yeungnam University (KR)
Openalex Percentile: Top 65%
Genomics and Phylogenetic Studies
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