Homophily Edge Augment Graph Neural Network for High-Class Homophily Variance Learning

Graph Neural Networks (GNNs) have achieved remarkable success in machine learning tasks by learning the features of graph data. However, experiments show that vanilla GNNs fail to achieve good classification performance in the field of graph anomaly detection. To address this issue, we propose and theoretically prove that the high-Class Homophily Variance (CHV) characteristic is the reason behind the suboptimal performance of GNN models in anomaly detection tasks. Statistical analysis shows that in most standard node classification datasets, homophily levels are similar across all classes, so CHV is low. In contrast, graph anomaly detection datasets have high CHV, as benign nodes are highly homophilic while anomalies are not, leading to a clear separation. To mitigate its impact, we propose a novel GNN model named Homophily Edge Augment Graph Neural Network (HEAug). Different from previous work, our method emphasizes generating new edges with low CHV value, using the original edges as an auxiliary. HEAug samples homophily adjacency matrices from scratch using a self-attention mechanism, and leverages nodes that are relevant in the feature space but not directly connected in the original graph. Additionally, we modify the loss function to punish the generation of unnecessary heterophilic edges by the model. Extensive comparison experiments demonstrate that HEAug achieved the best performance across eight benchmark datasets, including anomaly detection, edgeless node classification and adversarial attack. We also defined a heterophily attack to increase the CHV value in other graphs, demonstrating the effectiveness of our theory and model in various scenarios.

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Publication Details

Journal
IEEE Transactions on Pattern Analysis and Machine Intelligence
Published
2025-12-05
DOI
https://doi.org/10.1109/tpami.2025.3640635
Primary Topic
Advanced Graph Neural Networks
Type
article
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article

Homophily Edge Augment Graph Neural Network for High-Class Homophily Variance Learning

Rui Zhang, Yefeng Zheng, Dawei Cheng, Xiaoyang Wang et al.
IEEE Transactions on Pattern Analysis and Machine Intelligence
Advanced Graph Neural Networks
article

Homophily Edge Augment Graph Neural Network for High-Class Homophily Variance Learning

Rui Zhang, Yefeng Zheng, Dawei Cheng, Xiaoyang Wang, Xian Wu, Yi Ouyang, Xin Liu, Jie Yang, Minjian Guang
article en

Abstract

Graph Neural Networks (GNNs) have achieved remarkable success in machine learning tasks by learning the features of graph data. However, experiments show that vanilla GNNs fail to achieve good classification performance in the field of graph anomaly detection. To address this issue, we propose and theoretically prove that the high-Class Homophily Variance (CHV) characteristic is the reason behind the suboptimal performance of GNN models in anomaly detection tasks. Statistical analysis shows that in most standard node classification datasets, homophily levels are similar across all classes, so CHV is low. In contrast, graph anomaly detection datasets have high CHV, as benign nodes are highly homophilic while anomalies are not, leading to a clear separation. To mitigate its impact, we propose a novel GNN model named Homophily Edge Augment Graph Neural Network (HEAug). Different from previous work, our method emphasizes generating new edges with low CHV value, using the original edges as an auxiliary. HEAug samples homophily adjacency matrices from scratch using a self-attention mechanism, and leverages nodes that are relevant in the feature space but not directly connected in the original graph. Additionally, we modify the loss function to punish the generation of unnecessary heterophilic edges by the model. Extensive comparison experiments demonstrate that HEAug achieved the best performance across eight benchmark datasets, including anomaly detection, edgeless node classification and adversarial attack. We also defined a heterophily attack to increase the CHV value in other graphs, demonstrating the effectiveness of our theory and model in various scenarios.

IEEE Transactions on Pattern Analysis and Machine IntelligenceVol. 48(3)
Tongji University (CN), Donghua University (CN), Tencent (China) (CN), UNSW Sydney (AU)
Openalex Percentile: Top 79%
Advanced Graph Neural Networks
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