Integrating Statistical and Machine-Learning Approaches for Salmonella enterica Surveillance in Northwestern Italy: A One Health Data-Driven Framework
<i>Salmonella enterica</i> is a major cause of foodborne illness globally. We analysed 41,945 food samples collected under official surveillance in Piedmont (north-western Italy) between 2013 and 2023 to characterise contamination patterns and evaluate an integrated analytical framework combining classical statistical modelling with machine-learning prediction. Overall prevalence was low (2.20%; 95% CI: 2.06-2.35) but heterogeneous across matrices, with poultry and pork displaying the highest contamination levels (11.8% and 7.14%). Risk increased at distribution/retail stages, and contamination declined markedly from 2013 to 2018, with lower levels in late autumn. Meteorological factors had minimal influence. Mixed-effects models identified food category and production stage as the main determinants of contamination, while the XGBoost algorithm showed stable predictive performance (median absolute error ≈ 0.02) and spatially coherent estimates. SHAP analyses confirmed food composition variables as the dominant predictors. These findings highlight persistent vulnerabilities within poultry and swine supply chains, particularly at post-production stages, and illustrate the complementary value of combining explanatory and predictive approaches to strengthen risk-based, One Health-aligned food-safety surveillance.
Authors
- Mattia Begovoeva (ORCID: https://orcid.org/0000-0002-5626-6495)
- Giuseppe Ru (ORCID: https://orcid.org/0000-0002-0591-1132)
- Aitor Garcia‐Vozmediano (ORCID: https://orcid.org/0000-0002-4458-8294)
- Magda Sofia Roberto (ORCID: https://orcid.org/0000-0003-4127-561X)
- Monica Pitti (ORCID: https://orcid.org/0000-0002-5871-217X)
- Erica De Vita (ORCID: https://orcid.org/0000-0002-2659-0905)
- Angelo Romano (ORCID: https://orcid.org/0000-0002-6976-803X)
- Adriana Jimena Bernal Giraldo
- Michela Nobile Lanzarini
- A J Gioia
- Cristiana Maurella (ORCID: https://orcid.org/0000-0003-3481-8380)
- E. Crescio (ORCID: https://orcid.org/0000-0001-7058-6391)
- Aldo Brenda
- Eva Massone (ORCID: https://orcid.org/0009-0004-6374-0740)
- Alessia Raggio (ORCID: https://orcid.org/0009-0002-7979-2321)
Institutions
- University of Pisa (IT)
- Azienda Unità Sanitaria Locale di Ferrara (IT)
- Azienda Sanitaria Locale di Asti (IT)
- Agenzia Regionale Sanitaria della Puglia (IT)
- Regione Puglia (IT)
- Azienda Sanitaria Locale Roma 3 (IT)
- Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta (IT)
- Tecnológico de Monterrey (MX)
Publication Details
- Journal
- Microorganisms
- Published
- 2025-12-05
- DOI
- https://doi.org/10.3390/microorganisms13122773
- Primary Topic
- Salmonella and Campylobacter epidemiology
- Type
- article
- Field-Weighted Citation Impact
- 0.00