Integrating Statistical and Machine-Learning Approaches for Salmonella enterica Surveillance in Northwestern Italy: A One Health Data-Driven Framework

<i>Salmonella enterica</i> is a major cause of foodborne illness globally. We analysed 41,945 food samples collected under official surveillance in Piedmont (north-western Italy) between 2013 and 2023 to characterise contamination patterns and evaluate an integrated analytical framework combining classical statistical modelling with machine-learning prediction. Overall prevalence was low (2.20%; 95% CI: 2.06-2.35) but heterogeneous across matrices, with poultry and pork displaying the highest contamination levels (11.8% and 7.14%). Risk increased at distribution/retail stages, and contamination declined markedly from 2013 to 2018, with lower levels in late autumn. Meteorological factors had minimal influence. Mixed-effects models identified food category and production stage as the main determinants of contamination, while the XGBoost algorithm showed stable predictive performance (median absolute error ≈ 0.02) and spatially coherent estimates. SHAP analyses confirmed food composition variables as the dominant predictors. These findings highlight persistent vulnerabilities within poultry and swine supply chains, particularly at post-production stages, and illustrate the complementary value of combining explanatory and predictive approaches to strengthen risk-based, One Health-aligned food-safety surveillance.

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Publication Details

Journal
Microorganisms
Published
2025-12-05
DOI
https://doi.org/10.3390/microorganisms13122773
Primary Topic
Salmonella and Campylobacter epidemiology
Type
article
Field-Weighted Citation Impact
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article

Integrating Statistical and Machine-Learning Approaches for Salmonella enterica Surveillance in Northwestern Italy: A One Health Data-Driven Framework

Mattia Begovoeva, Giuseppe Ru, Aitor Garcia‐Vozmediano, Magda Sofia Roberto et al.
Microorganisms
Salmonella and Campylobacter epidemiology
article

Integrating Statistical and Machine-Learning Approaches for Salmonella enterica Surveillance in Northwestern Italy: A One Health Data-Driven Framework

Mattia Begovoeva, Giuseppe Ru, Aitor Garcia‐Vozmediano, Magda Sofia Roberto, Monica Pitti, Erica De Vita, Angelo Romano, Adriana Jimena Bernal Giraldo, Michela Nobile Lanzarini, A J Gioia, Cristiana Maurella, E. Crescio, Aldo Brenda, Eva Massone, Alessia Raggio
article en

Abstract

<i>Salmonella enterica</i> is a major cause of foodborne illness globally. We analysed 41,945 food samples collected under official surveillance in Piedmont (north-western Italy) between 2013 and 2023 to characterise contamination patterns and evaluate an integrated analytical framework combining classical statistical modelling with machine-learning prediction. Overall prevalence was low (2.20%; 95% CI: 2.06-2.35) but heterogeneous across matrices, with poultry and pork displaying the highest contamination levels (11.8% and 7.14%). Risk increased at distribution/retail stages, and contamination declined markedly from 2013 to 2018, with lower levels in late autumn. Meteorological factors had minimal influence. Mixed-effects models identified food category and production stage as the main determinants of contamination, while the XGBoost algorithm showed stable predictive performance (median absolute error ≈ 0.02) and spatially coherent estimates. SHAP analyses confirmed food composition variables as the dominant predictors. These findings highlight persistent vulnerabilities within poultry and swine supply chains, particularly at post-production stages, and illustrate the complementary value of combining explanatory and predictive approaches to strengthen risk-based, One Health-aligned food-safety surveillance.

MicroorganismsVol. 13(12)
University of Pisa (IT), Azienda Unità Sanitaria Locale di Ferrara (IT), Azienda Sanitaria Locale di Asti (IT), Agenzia Regionale Sanitaria della Puglia (IT), Regione Puglia (IT), Azienda Sanitaria Locale Roma 3 (IT), Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta (IT), Tecnológico de Monterrey (MX)
Openalex Percentile: Top 56%
Salmonella and Campylobacter epidemiology
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