Optogenetic Control the Activity of Pyruvate Decarboxylase in <i>Saccharomyces cerevisiae</i> for Tunable Ethanol Production

<i>Saccharomyces cerevisiae</i> is a widely used chassis in metabolic engineering. Due to the Crabtree effect, it preferentially produces ethanol under high-glucose conditions, limiting the synthesis of other valuable metabolites. Conventional metabolic engineering approaches typically rely on irreversible genetic modifications, making it insufficient for dynamic metabolic control. In contrast, optogenetics offers a reversible and tunable method for regulating cellular metabolism with high temporal precision. In this study, we engineered the pyruvate decarboxylase isozyme 1 (Pdc1) by inserting the photosensory modules (AsLOV2 and cpLOV2 domains) into rationally selected positions within the enzyme. Through a growth phenotype-based screening system, we identified two blue light-responsive variants, OptoPdc1<sup>D1</sup> and OptoPdc1<sup>D2</sup>, which enable light-dependent control of enzymatic activity. Leveraging these OptoPdc1 variants, we developed opto-<i>S. cerevisiae</i> strains, MLy-9 and MLy-10, which demonstrated high efficiency in modulating both cell growth and ethanol production. These strains allow reliable regulation of ethanol biosynthesis in response to blue light, achieving a dynamic control range of approximately 20- to 120-fold. The opto-<i>S. cerevisiae</i> strains exhibited dose-dependent production in response to blue light intensity and pulse patterns, confirming their potential for precise metabolic control. This work establishes a novel protein-level strategy for regulating metabolic pathways in <i>S. cerevisiae</i> and introduces an effective method for controlling ethanol metabolism via optogenetic regulation.

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Publication Details

Journal
ACS Synthetic Biology
Published
2025-12-03
DOI
https://doi.org/10.1021/acssynbio.5c00411
Primary Topic
Light effects on plants
Type
article
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article

Optogenetic Control the Activity of Pyruvate Decarboxylase in Saccharomyces cerevisiae for Tunable Ethanol Production

Qi Xiao, Guoping Zhao, Meizi Liu, Yanfei Zhang et al.
ACS Synthetic Biology
Light effects on plants
article

Optogenetic Control the Activity of Pyruvate Decarboxylase in Saccharomyces cerevisiae for Tunable Ethanol Production

Qi Xiao, Guoping Zhao, Meizi Liu, Yanfei Zhang, Junjun Yan, Yunhong Chen
article en

Abstract

<i>Saccharomyces cerevisiae</i> is a widely used chassis in metabolic engineering. Due to the Crabtree effect, it preferentially produces ethanol under high-glucose conditions, limiting the synthesis of other valuable metabolites. Conventional metabolic engineering approaches typically rely on irreversible genetic modifications, making it insufficient for dynamic metabolic control. In contrast, optogenetics offers a reversible and tunable method for regulating cellular metabolism with high temporal precision. In this study, we engineered the pyruvate decarboxylase isozyme 1 (Pdc1) by inserting the photosensory modules (AsLOV2 and cpLOV2 domains) into rationally selected positions within the enzyme. Through a growth phenotype-based screening system, we identified two blue light-responsive variants, OptoPdc1<sup>D1</sup> and OptoPdc1<sup>D2</sup>, which enable light-dependent control of enzymatic activity. Leveraging these OptoPdc1 variants, we developed opto-<i>S. cerevisiae</i> strains, MLy-9 and MLy-10, which demonstrated high efficiency in modulating both cell growth and ethanol production. These strains allow reliable regulation of ethanol biosynthesis in response to blue light, achieving a dynamic control range of approximately 20- to 120-fold. The opto-<i>S. cerevisiae</i> strains exhibited dose-dependent production in response to blue light intensity and pulse patterns, confirming their potential for precise metabolic control. This work establishes a novel protein-level strategy for regulating metabolic pathways in <i>S. cerevisiae</i> and introduces an effective method for controlling ethanol metabolism via optogenetic regulation.

ACS Synthetic BiologyVol. 14(12)
Tianjin University of Science and Technology (CN), Chinese Academy of Sciences (CN), Intelligent Synthetic Biology Center (KR), State Key Laboratory of Synthetic Chemistry (CN), Tianjin Institute of Industrial Biotechnology (CN), Center for Excellence in Molecular Plant Sciences (CN), University of Chinese Academy of Sciences (CN)
Openalex Percentile: Top 72%
Light effects on plants
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