LIMD2 is associated with an exhausted CD8⁺ T cell state linked to ICI response in clear cell renal cell carcinoma
Clear cell renal cell carcinoma (ccRCC) is characterized by abundant infiltration of CD8⁺ T cells; however, the clinical benefit from immune checkpoint inhibitors (ICI) remains limited. To clarify this paradox, we systematically investigated the functional states of CD8⁺ T cells in ccRCC, with a particular focus on exhaustion-associated subsets and their potential link to ICI responsiveness. By integrating six publicly available bulk and single-cell RNA sequencing datasets with independent institutional validation cohorts, we found that the majority of tumor-infiltrating CD8⁺ T cells exhibited an exhausted phenotype, characterized by elevated expression of canonical exhaustion markers. Importantly, we identified CD8⁺ T cells with high LIM domain-containing protein 2 (LIMD2) expression that co-express canonical exhaustion markers and are enriched in ICI responders. Single-cell transcriptomic analyses further supported markedly increased LIMD2 expression within CD8⁺ Tex cells from patients achieving clinical benefit. Multiplex immunofluorescence showed LIMD2 protein predominantly localized to CD8A⁺ T cells, co-expressed with exhaustion markers, and significantly enriched in tumor tissues of responders. Collectively, these findings indicate that CD8⁺ Tex cells with high LIMD2 expression are associated with ICI responses in ccRCC, positioning LIMD2 as a candidate predictive biomarker to refine patient stratification and inform immunotherapy optimization.
Authors
- Xing Bi
- Shuai Yuan (ORCID: https://orcid.org/0000-0003-4037-3429)
- Xiaolong Xiang
- Junfeng Zhang (ORCID: https://orcid.org/0000-0002-3511-8055)
- Kong M. Li (ORCID: https://orcid.org/0000-0003-2709-0344)
- Qingyan Peng
- Xiangdong Jiang (ORCID: https://orcid.org/0000-0001-7189-8944)
- Fuzhong Liu (ORCID: https://orcid.org/0000-0003-2471-9872)
- Ting Pan (ORCID: https://orcid.org/0000-0002-7106-7312)
- Peng Chen (ORCID: https://orcid.org/0000-0003-3463-0708)
- Chen Su (ORCID: https://orcid.org/0000-0002-2819-7058)
- Hongwei Nie
Institutions
- Xinjiang Medical University (CN)
- Tumor Hospital of Xinjiang Medical University (CN)
- The Central Hospital of Enshi Tujia and Miao Autonomous Prefecture (CN)
Publication Details
- Journal
- Scientific Reports
- Published
- 2025-12-04
- DOI
- https://doi.org/10.1038/s41598-025-27315-z
- Primary Topic
- Cancer Immunotherapy and Biomarkers
- Type
- article
- Field-Weighted Citation Impact
- 0.00
Funders
- National Natural Science Foundation of China
- Natural Science Foundation of Xinjiang