Analysis of the Performance of Representation Learning Methods for Entity Alignment: Benchmark Versus Real-World Data

Representation learning for entity alignment (EA) aims to identify entities in different knowledge graphs (KGs) that refer to the same real-world object by comparing their embedding similarity. Although many EA models perform well on synthetic benchmark datasets, this performance does not always transfer to real-world, incomplete, and domain-specific data. A systematic comparison between synthetic benchmarks and original heterogeneous datasets is still limited. Many EA models also restrict the alignment search space to validation entities, limiting coverage of real KG content. Within this setting, our results show that embedding-based EA models continue to face generalization challenges in realistic large-scale KG search spaces. We evaluate several competitive EA models-commonly tested on benchmarks such as DBP15K-on multiple real-world heterogeneous datasets. The experiments reveal a performance decrease when moving beyond synthetic benchmarks, indicating that current models do not fully capture the characteristics of real data. We also analyze semantic similarity and profiling features of the datasets to help explain these differences. This study outlines practical limitations of embedding-based EA methods and provides insights for developing approaches that better handle the variability and complexity found in real-world KG alignment tasks.

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Publication Details

Journal
Semantic Web
Published
2025-12-02
DOI
https://doi.org/10.1177/09217134251389825
Primary Topic
Advanced Graph Neural Networks
Type
article
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article

Analysis of the Performance of Representation Learning Methods for Entity Alignment: Benchmark Versus Real-World Data

Konstantin Todorov, Pierre Larmande, Bill Gates Happi Happi, François Scharffe et al.
Semantic Web
Advanced Graph Neural Networks
article

Analysis of the Performance of Representation Learning Methods for Entity Alignment: Benchmark Versus Real-World Data

Konstantin Todorov, Pierre Larmande, Bill Gates Happi Happi, François Scharffe, Ensiyeh Raoufi
article en

Abstract

Representation learning for entity alignment (EA) aims to identify entities in different knowledge graphs (KGs) that refer to the same real-world object by comparing their embedding similarity. Although many EA models perform well on synthetic benchmark datasets, this performance does not always transfer to real-world, incomplete, and domain-specific data. A systematic comparison between synthetic benchmarks and original heterogeneous datasets is still limited. Many EA models also restrict the alignment search space to validation entities, limiting coverage of real KG content. Within this setting, our results show that embedding-based EA models continue to face generalization challenges in realistic large-scale KG search spaces. We evaluate several competitive EA models-commonly tested on benchmarks such as DBP15K-on multiple real-world heterogeneous datasets. The experiments reveal a performance decrease when moving beyond synthetic benchmarks, indicating that current models do not fully capture the characteristics of real data. We also analyze semantic similarity and profiling features of the datasets to help explain these differences. This study outlines practical limitations of embedding-based EA methods and provides insights for developing approaches that better handle the variability and complexity found in real-world KG alignment tasks.

Semantic WebVol. 17(1)
Centre National de la Recherche Scientifique (FR), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (FR), Université de Montpellier (FR), Laboratoire d'Informatique, de Robotique et de Microélectronique de Montpellier (FR), Diversité, adaptation et développement des plantes (FR), Institut de Recherche pour le Développement (FR)
Openalex Percentile: Top 80%
Advanced Graph Neural Networks
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