An Immune Gene Signature Stratifies Breast Cancer Prognosis Through iCAF-Driven Immunosuppressive Microenvironment

<b>Background/Objectives:</b> Breast cancer is the leading cause of cancer-related mortality in women, highlighting the urgent need for robust prognostic tools to enable individualized risk stratification. <b>Methods</b>: Transcriptomic data from 1075 breast cancer and 113 adjacent normal tissues in The Cancer Genome Atlas (TCGA) were integrated with clinical information. Differential expression analysis identified 531 immune-related genes, which were further selected by univariate Cox regression and Least Absolute Shrinkage and Selection Operator (LASSO) regression to construct a 13-gene prognostic signature. The model was validated in an independent cohort (<i>n</i> = 327). Tumor immune microenvironment and single-cell RNA sequencing data were analyzed to explore underlying biological differences. <b>Results</b>: The 13-gene signature effectively stratified patients into low- and high-risk groups with significantly different overall survival in both the TCGA cohort (log-rank <i>p</i> < 0.0001; C-index = 0.678; 5-year AUC = 0.72) and the validation cohort (log-rank <i>p</i> < 0.0001; C-index = 0.703; 3-year AUC = 0.81). Low-risk tumors exhibited an antitumor immune microenvironment enriched in CD8<sup>+</sup> T cells, T follicular helper (Tfh) cells, and M1 macrophages, whereas high-risk tumors were dominated by immunosuppressive regulatory T cells and M2 macrophages (all <i>p</i> < 0.0001). Single-cell analysis revealed expansion of malignant epithelial cells and inflammatory cancer-associated fibroblasts (iCAFs) in high-risk tumors, with higher iCAF scores significantly associated with poorer survival (log-rank <i>p</i> = 0.00036). <b>Conclusions</b>: Collectively, this study delivers a rigorously validated 13-gene immune signature whose prognostic utility is rooted in distinct immune microenvironmental features, while unveiling iCAF-targeted therapeutic strategies as a promising intervention avenue.

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Journal
Biomedicines
Published
2025-12-02
DOI
https://doi.org/10.3390/biomedicines13122966
Primary Topic
Ferroptosis and cancer prognosis
Type
article
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0.00
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article

An Immune Gene Signature Stratifies Breast Cancer Prognosis Through iCAF-Driven Immunosuppressive Microenvironment

Sibin Mei, Chenhao Bai, Yunkun Lu, Tianyuan Pan et al.
Biomedicines
Ferroptosis and cancer prognosis
article

An Immune Gene Signature Stratifies Breast Cancer Prognosis Through iCAF-Driven Immunosuppressive Microenvironment

Sibin Mei, Chenhao Bai, Yunkun Lu, Tianyuan Pan, Huijuan Wang, Qian Cao, Kainan Lin
article en

Abstract

<b>Background/Objectives:</b> Breast cancer is the leading cause of cancer-related mortality in women, highlighting the urgent need for robust prognostic tools to enable individualized risk stratification. <b>Methods</b>: Transcriptomic data from 1075 breast cancer and 113 adjacent normal tissues in The Cancer Genome Atlas (TCGA) were integrated with clinical information. Differential expression analysis identified 531 immune-related genes, which were further selected by univariate Cox regression and Least Absolute Shrinkage and Selection Operator (LASSO) regression to construct a 13-gene prognostic signature. The model was validated in an independent cohort (<i>n</i> = 327). Tumor immune microenvironment and single-cell RNA sequencing data were analyzed to explore underlying biological differences. <b>Results</b>: The 13-gene signature effectively stratified patients into low- and high-risk groups with significantly different overall survival in both the TCGA cohort (log-rank <i>p</i> < 0.0001; C-index = 0.678; 5-year AUC = 0.72) and the validation cohort (log-rank <i>p</i> < 0.0001; C-index = 0.703; 3-year AUC = 0.81). Low-risk tumors exhibited an antitumor immune microenvironment enriched in CD8<sup>+</sup> T cells, T follicular helper (Tfh) cells, and M1 macrophages, whereas high-risk tumors were dominated by immunosuppressive regulatory T cells and M2 macrophages (all <i>p</i> < 0.0001). Single-cell analysis revealed expansion of malignant epithelial cells and inflammatory cancer-associated fibroblasts (iCAFs) in high-risk tumors, with higher iCAF scores significantly associated with poorer survival (log-rank <i>p</i> = 0.00036). <b>Conclusions</b>: Collectively, this study delivers a rigorously validated 13-gene immune signature whose prognostic utility is rooted in distinct immune microenvironmental features, while unveiling iCAF-targeted therapeutic strategies as a promising intervention avenue.

BiomedicinesVol. 13(12)
Sir Run Run Shaw Hospital (CN), First Affiliated Hospital Zhejiang University (CN), Zhejiang University (CN)
Openalex Percentile: Top 44%
Ferroptosis and cancer prognosis
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