Computational Explorations of Enzymes That Catalyze Ambimodal [4 + 2]/[6 + 4] Cycloadditions

ABSTRACT Ambimodal transition states (TSs) lead to two or more products via post‐transition state bifurcations (PTSB). Over the past decade, numerous examples of ambimodal cycloaddition reactions have been reported, and a number of these are involved in enzyme‐catalyzed reactions in biosynthesis. This review covers enzymes known to catalyze [4 + 2]/[6 + 4] ambimodal cycloadditions, in which a single transition state leads to both [4 + 2] and [6 + 4] cycloaddition products. We also describe recent advances in computational methods for the study of bifurcations, and predictions of product ratios that are otherwise determined by calculating a large number of trajectories with quasi‐classical molecular dynamics. These methods include entropy path sampling, and product distribution predictions with correlational methods.

Authors

Institutions

Publication Details

Journal
Transformative Chemistry
Published
2025-12-01
DOI
https://doi.org/10.1002/tch2.70000
Citations
1
Primary Topic
Plant biochemistry and biosynthesis
Type
article
Field-Weighted Citation Impact
0.81

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Computational Explorations of Enzymes That Catalyze Ambimodal [4 + 2]/[6 + 4] Cycloadditions

Ching Ching Lam, Qingyang Zhou, Kendall N. Houk, Fang Liu
1 citations
Transformative Chemistry
Plant biochemistry and biosynthesis
0.81
article

Computational Explorations of Enzymes That Catalyze Ambimodal [4 + 2]/[6 + 4] Cycloadditions

Ching Ching Lam, Qingyang Zhou, Kendall N. Houk, Fang Liu
article en
1 citations

Abstract

ABSTRACT Ambimodal transition states (TSs) lead to two or more products via post‐transition state bifurcations (PTSB). Over the past decade, numerous examples of ambimodal cycloaddition reactions have been reported, and a number of these are involved in enzyme‐catalyzed reactions in biosynthesis. This review covers enzymes known to catalyze [4 + 2]/[6 + 4] ambimodal cycloadditions, in which a single transition state leads to both [4 + 2] and [6 + 4] cycloaddition products. We also describe recent advances in computational methods for the study of bifurcations, and predictions of product ratios that are otherwise determined by calculating a large number of trajectories with quasi‐classical molecular dynamics. These methods include entropy path sampling, and product distribution predictions with correlational methods.

Transformative ChemistryVol. 1(1)
University of California, Los Angeles (US)
National Science Foundation, San Diego Supercomputer Center, Croucher Foundation, Office of Advanced Cyberinfrastructure, Division of Chemistry
Openalex Percentile: Top 21%
Plant biochemistry and biosynthesis
0.81
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

Computational Explorations of Enzymes That Catalyze Ambimodal [4 + 2]/[6 + 4] Cycloadditions — Ching Ching Lam, Qingyang Zhou, et al. · Transformative Chemistry (2025) | TGRS Research Map | TGRS