Computational Insights Into Antimicrobial Peptide‐Enhanced Dental Resin Composites: Targeting <i>Porphyromonas gingivalis</i> Heme‐Binding Proteins and Biofilms

The research aimed at investigating the antibacterial potential of dental resin composites when combined with various antimicrobial peptides (AMPs) against Porphyromonas gingivalis heme-binding proteins, which are associated with biofilm-related infections in restorative dentistry. A multistage computational approach was implemented to assess the AMP interactions. Molecular docking analyses demonstrated the promising binding of resin constituents with AMPs, and Pardaxin exhibited the highest binding affinity, followed by Tachystatin and Thermolysin. The best performing AMPs were then docked with P. gingivalis heme-binding proteins, and the complexes were subjected to 100 ns molecular dynamics simulations for stability assessment. The simulations confirmed stable interactions, while MM/PBSA binding energy calculations demonstrated significant binding strengths, particularly for Pardaxin (ΔG = -65.58 kcal/mol) and Tachystatin (ΔG = -48.71 kcal/mol), with Thermolysin also showing promising results (ΔG = -39.92 kcal/mol). The comprehensive analysis indicates the potential of incorporating Pardaxin, Tachystatin, and Thermolysin into dental resin composites to enhance their antibacterial activity against P. gingivalis. However, the study is limited to in silico assessments and relies on static representations of resin monomers that may not accurately represent the biological and clinical environment. Experimental validation through in vitro and in vivo studies, including cytocompatibility testing, peptide release behavior, and long-term mechanical stability, is essential to establish their practical application in restorative dentistry.

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Journal
MicrobiologyOpen
Published
2025-12-01
DOI
https://doi.org/10.1002/mbo3.70184
Primary Topic
Antimicrobial Peptides and Activities
Type
article
Field-Weighted Citation Impact
0.00

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article

Computational Insights Into Antimicrobial Peptide‐Enhanced Dental Resin Composites: Targeting Porphyromonas gingivalis Heme‐Binding Proteins and Biofilms

Artak G. Heboyan, Fahad Hussain Alhamoudi, Lujain Ibrahim N. Aldosari, Sunil Kumar Vaddamanu et al.
MicrobiologyOpen
Antimicrobial Peptides and Activities
article

Computational Insights Into Antimicrobial Peptide‐Enhanced Dental Resin Composites: Targeting Porphyromonas gingivalis Heme‐Binding Proteins and Biofilms

Artak G. Heboyan, Fahad Hussain Alhamoudi, Lujain Ibrahim N. Aldosari, Sunil Kumar Vaddamanu, Abdulkhaliq Ali F. Alshadidi, Mohamed Saheer Kuruniyan, Doni Dermawan, Rayan Ibrahim H. Binduhayyim, Rajesh Vyas, Ravinder Saini
article en

Abstract

The research aimed at investigating the antibacterial potential of dental resin composites when combined with various antimicrobial peptides (AMPs) against Porphyromonas gingivalis heme-binding proteins, which are associated with biofilm-related infections in restorative dentistry. A multistage computational approach was implemented to assess the AMP interactions. Molecular docking analyses demonstrated the promising binding of resin constituents with AMPs, and Pardaxin exhibited the highest binding affinity, followed by Tachystatin and Thermolysin. The best performing AMPs were then docked with P. gingivalis heme-binding proteins, and the complexes were subjected to 100 ns molecular dynamics simulations for stability assessment. The simulations confirmed stable interactions, while MM/PBSA binding energy calculations demonstrated significant binding strengths, particularly for Pardaxin (ΔG = -65.58 kcal/mol) and Tachystatin (ΔG = -48.71 kcal/mol), with Thermolysin also showing promising results (ΔG = -39.92 kcal/mol). The comprehensive analysis indicates the potential of incorporating Pardaxin, Tachystatin, and Thermolysin into dental resin composites to enhance their antibacterial activity against P. gingivalis. However, the study is limited to in silico assessments and relies on static representations of resin monomers that may not accurately represent the biological and clinical environment. Experimental validation through in vitro and in vivo studies, including cytocompatibility testing, peptide release behavior, and long-term mechanical stability, is essential to establish their practical application in restorative dentistry.

MicrobiologyOpenVol. 14(6)
Warsaw University of Technology (PL), Yerevan State Medical University (AM), Tehran University of Medical Sciences (IR), King Khalid University (SA), Saveetha University (IN)
King Khalid University
Openalex Percentile: Top 64%
Antimicrobial Peptides and Activities
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