3D Agent-Based Modeling without Chemical Signaling Recreates Collective Behaviors seen in <i>Myxococcus xanthus</i> Colonies

is a soil-dwelling bacterium that lives in dense populations of millions of cells and displays an array of collective behaviors and macroscopic patterns in response to environmental conditions. The transitions between macroscopic patterns formed by this species are driven by changes in cell motility such as increasing Péclet number via increasing cell speed and reversal period. While cells are capable of passing contact-mediated signals that can trigger reversal events, we set out to study which aspects of collective behavior may be driven by simple individual cell behavior changes in the absence of direct chemical cell signaling. We do this through three-dimensional agent-based simulations with a bead-spring chain model. We find that when tuned to match single-cell properties, this model captures multicellular structures observed at both intermediate and global scales in experiments. Increasing cell speed and reversal period together (as cells do when they starve) maintains a constant overall nematic structure in the population, while significantly increasing the net flow into and out of topological defects, which drives an increased aggregation that leads to fruiting-body formation during starvation.

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Publication Details

Journal
PRX Life
Published
2025-09-30
DOI
https://doi.org/10.1103/jfqj-2n4q
Primary Topic
Micro and Nano Robotics
Type
article
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article

3D Agent-Based Modeling without Chemical Signaling Recreates Collective Behaviors seen in Myxococcus xanthus Colonies

Matthew E. Black, Katherine Copenhagen, Joshua W. Shaevitz
PRX Life
Micro and Nano Robotics
article

3D Agent-Based Modeling without Chemical Signaling Recreates Collective Behaviors seen in Myxococcus xanthus Colonies

Matthew E. Black, Katherine Copenhagen, Joshua W. Shaevitz
article en

Abstract

is a soil-dwelling bacterium that lives in dense populations of millions of cells and displays an array of collective behaviors and macroscopic patterns in response to environmental conditions. The transitions between macroscopic patterns formed by this species are driven by changes in cell motility such as increasing Péclet number via increasing cell speed and reversal period. While cells are capable of passing contact-mediated signals that can trigger reversal events, we set out to study which aspects of collective behavior may be driven by simple individual cell behavior changes in the absence of direct chemical cell signaling. We do this through three-dimensional agent-based simulations with a bead-spring chain model. We find that when tuned to match single-cell properties, this model captures multicellular structures observed at both intermediate and global scales in experiments. Increasing cell speed and reversal period together (as cells do when they starve) maintains a constant overall nematic structure in the population, while significantly increasing the net flow into and out of topological defects, which drives an increased aggregation that leads to fruiting-body formation during starvation.

PRX LifeVol. 3(4)
Princeton University (US)
Openalex Percentile: Top 76%
Micro and Nano Robotics
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3D Agent-Based Modeling without Chemical Signaling Recreates Collective Behaviors seen in <i>Myxococcus xanthus</i> Colonies — Matthew E. Black, Katherine Copenhagen, et al. · PRX Life (2025) | TGRS Research Map | TGRS