Identification and Characterization of the Efbzip Gene Family in Erianthus fulvus and Exploration of Functional Genes Involved in Sucrose Metabolism

<b>Background/Objectives</b>: Sugarcane (<i>Saccharum</i> spp.) is a major global sugar crop, and improving sucrose accumulation is critical for industry and bioenergy. Due to its high Brix content, <i>Erianthus fulvus</i> (<i>E. fulvus</i>) is valuable for genetic improvement of sugarcane. The bZIP transcription factor family critically regulates plant sucrose metabolism, but its roles in sugarcane remain largely unexplored. <b>Methods</b>: Through bioinformatics methods, <i>Efbzip</i> gene family members were systematically identified within the genome of <i>E. fulvus</i>. Gene expression patterns in distinct plant tissues were examined by RNA-seq and quantitative real-time PCR (qRT-PCR). Furthermore, genes potentially involved in sucrose metabolism were screened using transient expression assays and subcellular localization studies conducted in tobacco. <b>Results</b>: Seventy-nine <i>Efbzip</i> genes were identified and classified into nine subgroups, showing uneven distribution across ten chromosomes. Among ten conserved motifs, Motif1 was most conserved. Subcellular localization and physicochemical analyses showed most <i>Efbzip</i> proteins were hydrophilic and nuclear-localized. Cis-regulatory element analysis suggested <i>Efbzip</i> proteins regulate sucrose metabolism through hormone and light-responsive pathways. Segmental duplication primarily drove <i>Efbzip</i> gene family expansion. qRT-PCR showed predominant expression in stems and leaves, with subgroup-specific patterns. Nuclear localization of <i>Efbzip52</i> was confirmed. Transient overexpression of <i>Efbzip52</i>, <i>Efbzip61</i>, and <i>Efbzip64</i> significantly increased sucrose content in tobacco leaves, with highly statistically significant (<i>p</i> < 0.0001). <b>Conclusions</b>: In this study, the <i>Efbzip</i> gene family of <i>E. fulvus</i> was systematically characterized for the first time. Key candidate genes potentially involved in sucrose metabolism were identified, providing potential targets for the genetic improvement of sugarcane.

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Journal
Genes
Published
2025-12-01
DOI
https://doi.org/10.3390/genes16121434
Primary Topic
Sugarcane Cultivation and Processing
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article
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article

Identification and Characterization of the Efbzip Gene Family in Erianthus fulvus and Exploration of Functional Genes Involved in Sucrose Metabolism

Zhenfeng Qian, Yujie Wang, Fusheng Li, Lilian He et al.
Genes
Sugarcane Cultivation and Processing
article

Identification and Characterization of the Efbzip Gene Family in Erianthus fulvus and Exploration of Functional Genes Involved in Sucrose Metabolism

Zhenfeng Qian, Yujie Wang, Fusheng Li, Lilian He, Changzu Zhao, Qian Ding, Weiyou Nong
article en

Abstract

<b>Background/Objectives</b>: Sugarcane (<i>Saccharum</i> spp.) is a major global sugar crop, and improving sucrose accumulation is critical for industry and bioenergy. Due to its high Brix content, <i>Erianthus fulvus</i> (<i>E. fulvus</i>) is valuable for genetic improvement of sugarcane. The bZIP transcription factor family critically regulates plant sucrose metabolism, but its roles in sugarcane remain largely unexplored. <b>Methods</b>: Through bioinformatics methods, <i>Efbzip</i> gene family members were systematically identified within the genome of <i>E. fulvus</i>. Gene expression patterns in distinct plant tissues were examined by RNA-seq and quantitative real-time PCR (qRT-PCR). Furthermore, genes potentially involved in sucrose metabolism were screened using transient expression assays and subcellular localization studies conducted in tobacco. <b>Results</b>: Seventy-nine <i>Efbzip</i> genes were identified and classified into nine subgroups, showing uneven distribution across ten chromosomes. Among ten conserved motifs, Motif1 was most conserved. Subcellular localization and physicochemical analyses showed most <i>Efbzip</i> proteins were hydrophilic and nuclear-localized. Cis-regulatory element analysis suggested <i>Efbzip</i> proteins regulate sucrose metabolism through hormone and light-responsive pathways. Segmental duplication primarily drove <i>Efbzip</i> gene family expansion. qRT-PCR showed predominant expression in stems and leaves, with subgroup-specific patterns. Nuclear localization of <i>Efbzip52</i> was confirmed. Transient overexpression of <i>Efbzip52</i>, <i>Efbzip61</i>, and <i>Efbzip64</i> significantly increased sucrose content in tobacco leaves, with highly statistically significant (<i>p</i> < 0.0001). <b>Conclusions</b>: In this study, the <i>Efbzip</i> gene family of <i>E. fulvus</i> was systematically characterized for the first time. Key candidate genes potentially involved in sucrose metabolism were identified, providing potential targets for the genetic improvement of sugarcane.

GenesVol. 16(12)
Yunnan Agricultural University (CN)
Openalex Percentile: Top 73%
Sugarcane Cultivation and Processing
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