ChEBI: re-engineered for a sustainable future

Chemical Entities of Biological Interest (ChEBI) is a high-quality, manually curated, and open-access database and ontology of chemical entities available online at https://www.ebi.ac.uk/chebi/. The chemical entities in question are either naturally occurring compounds or synthetic compounds that play a vital role in the processes of living organisms. ChEBI was launched in 2004, and over the years the original codebase has become increasingly difficult to maintain. Here, we describe the complete overhaul and modernization of ChEBI's infrastructure, including its codebase and associated tools (website, web services, and submission tool) to ensure the continued availability and growth of this critical resource for the global bioinformatics community and beyond. The infrastructure overhaul also enabled us to introduce new features and capabilities into ChEBI as well as to update or deprecate redundant ones.

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Publication Details

Journal
Nucleic Acids Research
Published
2025-10-29
DOI
https://doi.org/10.1093/nar/gkaf1271
Citations
9
Primary Topic
Biomedical Text Mining and Ontologies
Type
article
Field-Weighted Citation Impact
7.25
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article

ChEBI: re-engineered for a sustainable future

Carlos Moreno, Tevfik Kizilören, Venkatesh Muthukrishnan, Eloy Félix et al.
9 citations
Nucleic Acids Research
Biomedical Text Mining and Ontologies
7.25
article

ChEBI: re-engineered for a sustainable future

Carlos Moreno, Tevfik Kizilören, Venkatesh Muthukrishnan, Eloy Félix, Adnan Malik, Noel M. O’Boyle, Andrew R. Leach, Juan Miguel Mosquera, Barbara Zdrazil, Muhammad Arsalan
article en
9 citations

Abstract

Chemical Entities of Biological Interest (ChEBI) is a high-quality, manually curated, and open-access database and ontology of chemical entities available online at https://www.ebi.ac.uk/chebi/. The chemical entities in question are either naturally occurring compounds or synthetic compounds that play a vital role in the processes of living organisms. ChEBI was launched in 2004, and over the years the original codebase has become increasingly difficult to maintain. Here, we describe the complete overhaul and modernization of ChEBI's infrastructure, including its codebase and associated tools (website, web services, and submission tool) to ensure the continued availability and growth of this critical resource for the global bioinformatics community and beyond. The infrastructure overhaul also enabled us to introduce new features and capabilities into ChEBI as well as to update or deprecate redundant ones.

Nucleic Acids ResearchVol. 54(D1)
European Bioinformatics Institute (GB), Bioinformatics Institute (RU)
Openalex Percentile: Top 2%
Biomedical Text Mining and Ontologies
7.25
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ChEBI: re-engineered for a sustainable future — Carlos Moreno, Tevfik Kizilören, et al. · Nucleic Acids Research (2025) | TGRS Research Map | TGRS