Structural insights into endogenous agonist selectivity of aminergic receptors from the octopamine β2 receptor

Tyrosine-derived amines (TDAs), such as octopamine, noradrenaline, dopamine, and tyramine, are essential neurotransmitters that play diverse roles in various physiological processes. The distinct receptor selectivity of these structurally similar molecules is vital for their specific functions. However, all these receptors belong to the same subfamily of G-protein-coupled receptors and share high sequence homology within their orthosteric binding sites. The molecular basis of this selectivity remains unclear because of the absence of structural data on octopamine and tyramine receptors. In this study, we present cryo-electron microscopy structures of the deer tick octopamine β<sub>2</sub> receptor (octβ<sub>2</sub>R) bound to octopamine or <i>N</i>-2,4-dimethylphenyl-<i>N</i>'-methylformamidine (DPMF), an acaricidal amitraz metabolite. Octopamine and DPMF formed aromatic interactions with Y307<sup>6.55</sup> and F328<sup>7.39</sup>, residues crucial for octβ<sub>2</sub>R activation. The lower potency of other TDAs for octβ<sub>2</sub>R stems from the subtle effect of functional groups on both interactions, i.e. the meta-hydroxyl group of noradrenaline and dopamine hinders edge-to-edge interaction with Y307<sup>6.55</sup>, and the absence of a 1-hydroxyl group in dopamine and tyramine prevents π-hydrogen bonding with F328<sup>7.39</sup>. These structural insights into octβ<sub>2</sub>R selectivity are likely applicable across other TDA receptors, highlighting the pivotal role of residues 6.55 and 7.39. Consequently, the elucidated selection mechanism provides fundamental knowledge of aminergic ligand recognition, a process crucial for neurotransmission and overall organismal function.

Authors

Institutions

Publication Details

Journal
PNAS Nexus
Published
2025-11-28
DOI
https://doi.org/10.1093/pnasnexus/pgaf376
Primary Topic
Receptor Mechanisms and Signaling
Type
article
Field-Weighted Citation Impact
0.00

Funders

Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Structural insights into endogenous agonist selectivity of aminergic receptors from the octopamine β2 receptor

Mayumi Yonemochi, Tomomi Uchikubo‐Kamo, Kazushige Katsura, Tetsuya Hori et al.
PNAS Nexus
Receptor Mechanisms and Signaling
article

Structural insights into endogenous agonist selectivity of aminergic receptors from the octopamine β2 receptor

Mayumi Yonemochi, Tomomi Uchikubo‐Kamo, Kazushige Katsura, Tetsuya Hori, Mikako Shirouzu, Sayako Miyamoto-Kohno
article en

Abstract

Tyrosine-derived amines (TDAs), such as octopamine, noradrenaline, dopamine, and tyramine, are essential neurotransmitters that play diverse roles in various physiological processes. The distinct receptor selectivity of these structurally similar molecules is vital for their specific functions. However, all these receptors belong to the same subfamily of G-protein-coupled receptors and share high sequence homology within their orthosteric binding sites. The molecular basis of this selectivity remains unclear because of the absence of structural data on octopamine and tyramine receptors. In this study, we present cryo-electron microscopy structures of the deer tick octopamine β<sub>2</sub> receptor (octβ<sub>2</sub>R) bound to octopamine or <i>N</i>-2,4-dimethylphenyl-<i>N</i>'-methylformamidine (DPMF), an acaricidal amitraz metabolite. Octopamine and DPMF formed aromatic interactions with Y307<sup>6.55</sup> and F328<sup>7.39</sup>, residues crucial for octβ<sub>2</sub>R activation. The lower potency of other TDAs for octβ<sub>2</sub>R stems from the subtle effect of functional groups on both interactions, i.e. the meta-hydroxyl group of noradrenaline and dopamine hinders edge-to-edge interaction with Y307<sup>6.55</sup>, and the absence of a 1-hydroxyl group in dopamine and tyramine prevents π-hydrogen bonding with F328<sup>7.39</sup>. These structural insights into octβ<sub>2</sub>R selectivity are likely applicable across other TDA receptors, highlighting the pivotal role of residues 6.55 and 7.39. Consequently, the elucidated selection mechanism provides fundamental knowledge of aminergic ligand recognition, a process crucial for neurotransmission and overall organismal function.

PNAS NexusVol. 4(12)
RIKEN Center for Biosystems Dynamics Research (JP), RIKEN Center for Integrative Medical Sciences (JP)
Japan Society for the Promotion of Science, RIKEN
Openalex Percentile: Top 66%
Receptor Mechanisms and Signaling
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.