Transfiguring Novel Marine Natural Product as Oncogenic KRAS G12C Mutant Inhibitors via <i>In-Silico</i> and Computational Approaches

KRAS mutations cause a variety of malignancies, with the KRAS-G12C variation serving as a key oncogenic target. Despite the approval of Sotorasib for KRAS G12C-mutated NSCLC, resistance and poor efficacy indicate the need for new inhibitors. This study screened over 11,800 marine-derived chemicals from the CMNPD database using a computer-assisted workflow. Following drug-likeness filtering and virtual screening, three candidates (CMNPD27430, CMNPD23547 and CMNPD10958) demonstrated higher binding affinities to KRAS-G12C than Sotorasib. Molecular dynamics simulations (100 ns) confirmed complex stability, which was validated by RMSD, RMSF, Rg, SASA and hydrogen bonding analysis. ADMET profiling also revealed favorable drug-like and pharmacokinetic characteristics. These findings suggest that marine natural compounds are viable scaffolds for the future development of KRAS-G12C inhibitors.

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Publication Details

Journal
Journal of Computational Biophysics and Chemistry
Published
2025-11-28
DOI
https://doi.org/10.1142/s2737416526500353
Primary Topic
Protein Kinase Regulation and GTPase Signaling
Type
article
Field-Weighted Citation Impact
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article

Transfiguring Novel Marine Natural Product as Oncogenic KRAS G12C Mutant Inhibitors via In-Silico and Computational Approaches

Muhammad Husnain, Fakhria A. Al‐Joufi, Reem Nabil Hassan, Tariq Aziz et al.
Journal of Computational Biophysics and Chemistry
Protein Kinase Regulation and GTPase Signaling
article

Transfiguring Novel Marine Natural Product as Oncogenic KRAS G12C Mutant Inhibitors via In-Silico and Computational Approaches

Muhammad Husnain, Fakhria A. Al‐Joufi, Reem Nabil Hassan, Tariq Aziz, Nawal Al‐Hoshani, Ayesha Waqar, Nausheen Nazir, Maher S. Alwethaynani, Rania Ali El Hadi Mohamed, Munazza Kanwal
article en

Abstract

KRAS mutations cause a variety of malignancies, with the KRAS-G12C variation serving as a key oncogenic target. Despite the approval of Sotorasib for KRAS G12C-mutated NSCLC, resistance and poor efficacy indicate the need for new inhibitors. This study screened over 11,800 marine-derived chemicals from the CMNPD database using a computer-assisted workflow. Following drug-likeness filtering and virtual screening, three candidates (CMNPD27430, CMNPD23547 and CMNPD10958) demonstrated higher binding affinities to KRAS-G12C than Sotorasib. Molecular dynamics simulations (100 ns) confirmed complex stability, which was validated by RMSD, RMSF, Rg, SASA and hydrogen bonding analysis. ADMET profiling also revealed favorable drug-like and pharmacokinetic characteristics. These findings suggest that marine natural compounds are viable scaffolds for the future development of KRAS-G12C inhibitors.

Journal of Computational Biophysics and ChemistryVol. 25(11)
Princess Nourah bint Abdulrahman University (SA), King Abdulaziz University (SA), University of Ioannina (GR), Jouf University (SA), Shaqra University (SA), National University of Medical Sciences (PK), University of Malakand (PK)
Openalex Percentile: Top 66%
Protein Kinase Regulation and GTPase Signaling
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