Control of encounter kinetics by chemically active droplets

Biomolecular condensates play a crucial role in the spatial organization of living matter. These membrane-less organelles, resulting from liquid-liquid phase separation, operate far from thermodynamic equilibrium, with their size and stability influenced by nonequilibrium chemical reactions. While condensates are frequently considered optimized nanoreactors that enhance molecular encounters, their actual impact on reaction kinetics remains unclear due to competing effects such as diffusion hindrance, and random trapping in nonspecific condensates. In this study, we develop a microscopic, stochastic model for chemically active droplets, incorporating reaction-driven modulation of protein interactions. Using Brownian dynamics simulations, we investigate how protein interactions and active coupling to a free energy reservoir influence phase separation, molecular transport, and reaction kinetics. We demonstrate that the intensity of the chemical drive governs surface dynamics, generating fluxes that modulate bimolecular reaction rates. Comparing active emulsions to homogeneous systems, we reveal that condensates can either accelerate or decelerate molecular encounters. Our findings provide key insights into the role of biomolecular condensates as potential regulators of intracellular reaction kinetics.

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Publication Details

Journal
Proceedings of the National Academy of Sciences
Published
2025-12-02
DOI
https://doi.org/10.1073/pnas.2511670122
Primary Topic
Micro and Nano Robotics
Type
article
Field-Weighted Citation Impact
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article

Control of encounter kinetics by chemically active droplets

Vincent Dahirel, Pierre Illien, Marie Jardat, Roxanne Berthin et al.
Proceedings of the National Academy of Sciences
Micro and Nano Robotics
article

Control of encounter kinetics by chemically active droplets

Vincent Dahirel, Pierre Illien, Marie Jardat, Roxanne Berthin, Jacques Fries
article en

Abstract

Biomolecular condensates play a crucial role in the spatial organization of living matter. These membrane-less organelles, resulting from liquid-liquid phase separation, operate far from thermodynamic equilibrium, with their size and stability influenced by nonequilibrium chemical reactions. While condensates are frequently considered optimized nanoreactors that enhance molecular encounters, their actual impact on reaction kinetics remains unclear due to competing effects such as diffusion hindrance, and random trapping in nonspecific condensates. In this study, we develop a microscopic, stochastic model for chemically active droplets, incorporating reaction-driven modulation of protein interactions. Using Brownian dynamics simulations, we investigate how protein interactions and active coupling to a free energy reservoir influence phase separation, molecular transport, and reaction kinetics. We demonstrate that the intensity of the chemical drive governs surface dynamics, generating fluxes that modulate bimolecular reaction rates. Comparing active emulsions to homogeneous systems, we reveal that condensates can either accelerate or decelerate molecular encounters. Our findings provide key insights into the role of biomolecular condensates as potential regulators of intracellular reaction kinetics.

Proceedings of the National Academy of SciencesVol. 122(49)
Centre National de la Recherche Scientifique (FR), TiGenix (Spain) (ES), Sorbonne Université (FR), PHENIX laboratory (FR), Laboratoire Médiations (FR)
Openalex Percentile: Top 76%
Micro and Nano Robotics
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