Comprehensive Genomic Profiling of Small-Cell Lung Cancer Reveals Frequent Potentially Targetable Alterations

Small-cell lung carcinoma (SCLC) remains one of the most aggressive lung cancers and continues to pose a major challenge for precision oncology. Despite its morphological uniformity, SCLC exhibits marked molecular heterogeneity with recurrent, potentially targetable genomic alterations. Comprehensive profiling is often hindered by limited tissue availability and the need for rapid therapeutic intervention. We performed genomic profiling of 55 primary and metastatic SCLC samples using a 324-gene hybrid-capture next-generation sequencing panel. Consistent with prior reports, nearly all tumors exhibited biallelic <i>TP53</i> and <i>RB1</i> inactivation. Recurrent alterations involved the PI3K/Akt/mTOR pathway (62%), chromatin regulators (42%), and NOTCH signaling genes (15%). <i>PTEN</i> mutations were enriched in brain metastases. Frequent copy-number gains affected <i>SOX2</i>, <i>NKX2-1</i>, MYC-family genes, and <i>CCNE1</i>. Two novel recurrent amplifications of potential clinical significance were identified: <i>TYRO3</i> (33%) and <i>SDHA</i> (13%). <i>TYRO3</i>, a TAM family receptor tyrosine kinase, and <i>SDHA</i>, a mitochondrial enzyme involved in succinate metabolism, may contribute to tumor progression and represent emerging therapeutic vulnerabilities. These findings underscore the genomic diversity of SCLC and highlight the potential utility of broad next-generation sequencing in uncovering new molecular targets for precision therapy.

Authors

Institutions

Publication Details

Journal
International Journal of Molecular Sciences
Published
2025-11-27
DOI
https://doi.org/10.3390/ijms262311512
Primary Topic
Lung Cancer Research Studies
Type
article
Field-Weighted Citation Impact
0.00
Controls
|||
ALL TIME
JAN
FEB
MAR
APR
MAY
JUN
JUL
AUG
SEP
OCT
article

Comprehensive Genomic Profiling of Small-Cell Lung Cancer Reveals Frequent Potentially Targetable Alterations

Attila Gyenesei, Zoltán Krabóth, Emőke Papp, Péter Urbán et al.
International Journal of Molecular Sciences
Lung Cancer Research Studies
article

Comprehensive Genomic Profiling of Small-Cell Lung Cancer Reveals Frequent Potentially Targetable Alterations

Attila Gyenesei, Zoltán Krabóth, Emőke Papp, Péter Urbán, Veronika Sárosi, Árpád Boronkai, Béla Kajtár, István Ruzsics, Dániel Schmalz, Veronika Czoma
article en

Abstract

Small-cell lung carcinoma (SCLC) remains one of the most aggressive lung cancers and continues to pose a major challenge for precision oncology. Despite its morphological uniformity, SCLC exhibits marked molecular heterogeneity with recurrent, potentially targetable genomic alterations. Comprehensive profiling is often hindered by limited tissue availability and the need for rapid therapeutic intervention. We performed genomic profiling of 55 primary and metastatic SCLC samples using a 324-gene hybrid-capture next-generation sequencing panel. Consistent with prior reports, nearly all tumors exhibited biallelic <i>TP53</i> and <i>RB1</i> inactivation. Recurrent alterations involved the PI3K/Akt/mTOR pathway (62%), chromatin regulators (42%), and NOTCH signaling genes (15%). <i>PTEN</i> mutations were enriched in brain metastases. Frequent copy-number gains affected <i>SOX2</i>, <i>NKX2-1</i>, MYC-family genes, and <i>CCNE1</i>. Two novel recurrent amplifications of potential clinical significance were identified: <i>TYRO3</i> (33%) and <i>SDHA</i> (13%). <i>TYRO3</i>, a TAM family receptor tyrosine kinase, and <i>SDHA</i>, a mitochondrial enzyme involved in succinate metabolism, may contribute to tumor progression and represent emerging therapeutic vulnerabilities. These findings underscore the genomic diversity of SCLC and highlight the potential utility of broad next-generation sequencing in uncovering new molecular targets for precision therapy.

International Journal of Molecular SciencesVol. 26(23)
University of Pecs (HU)
Openalex Percentile: Top 49%
Lung Cancer Research Studies
AI Navigator

Ask Laika to Summarize, Analyze, and Connect papers live on the map.

Summarize Papers & Methodologies

Extract key findings, datasets, and comparative methods across publications.

Benchmark Rankings & Visual Analytics

Rank top research institutions, authors, funders, topics, and journals by Field-Weighted Citation Impact (FWCI) and paper volume with instant charts.

Connect Distant Disciplines

Bridge topological clusters on the map to find hidden collaborative intersections.

Comprehensive Genomic Profiling of Small-Cell Lung Cancer Reveals Frequent Potentially Targetable Alterations — Attila Gyenesei, Zoltán Krabóth, et al. · International Journal of Molecular Sciences (2025) | TGRS Research Map | TGRS