Phenotypic Characterization and Transcriptome Analysis of the Dwarf Mutant zmbrd1 in Maize

<b>Background:</b> Maize (<i>Zea mays</i> L.) is a vital global crop, and yield improvement through dwarfing breeding-inspired by the Green Revolution-holds promise for addressing food security challenges. Despite the identification of over 60 dwarf genes in maize, their genetic diversity remains limited. Brassinosteroids (BRs) are key phytohormones that regulate plant height, and mutations in BR-related genes often result in dwarf phenotypes. <b>Methods:</b> The <i>zmbrd1</i> mutant was generated via EMS mutagenesis in the B73 background. Phenotypic traits (plant height, root length) and histological features (e.g., mesocotyl cell length) were compared between mutant and wild-type plants. Transcriptome sequencing of leaves and root tips identified differentially expressed genes (DEGs), followed by GO and KEGG enrichment analyses. Key hormone-related genes were validated by means of qRT-PCR. <b>Results:</b> The <i>zmbrd1</i> mutant exhibited severe dwarfism and reduced root length, primarily due to inhibited longitudinal cell elongation in internodes. Transcriptome analysis revealed 1652 DEGs in leaves and 1450 DEGs in roots. Enriched pathways included BR biosynthesis, plant hormone signal transduction, and glutathione metabolism. In leaves, upregulated genes were linked to hormone signaling and chloroplast function, while downregulated genes involved oxidoreductase activity and stress response. In roots, DEGs were enriched in ethylene signaling, MAPK pathways, and plant-pathogen interaction, suggesting impaired defense responses. qRT-PCR confirmed dysregulation of hormone-related genes: GA biosynthesis genes were downregulated, whereas auxin-related genes were upregulated in leaves but downregulated in roots. <b>Conclusions:</b> The dwarf phenotype of <i>zmbrd1</i> stems from disrupted BR biosynthesis, leading to hormonal imbalance (particularly in GA and auxin pathways), oxidative stress, and suppressed cell elongation. Our results suggest that ZmBRD1 plays a key role in integrating aboveground and underground growth likely through modulating hormone crosstalk. This study elucidates BR-mediated height regulation and provides genetic resources for maize breeding.